BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924027

Length=302
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55207.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   348    2e-95


> AT1G55207.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system. | chr1:20595969-20596498 REVERSE LENGTH=530
Length=530

 Score =  348 bits (188),  Expect = 2e-95
 Identities = 262/296 (89%), Gaps = 12/296 (4%)
 Strand=Plus/Plus

Query  17   CTC-AAATGGCTCCGTGGACCGAAATATTGACAAATGCTGCCATTTTTGTGATAATCCAA  75
            ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  169  CTCTAAATGGCTCTGTGGACGGAAATATTGACAAATGCTGCCATTTTTGTGATAATCCAA  228

Query  76   GCTCTAGCGTTTCTGATAATCTTCACTTCTTCCGACATATTCTCCTCCAAGATCAAGATG  135
            |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  229  GCTCTAGCGTTTCTCATAATCTCCACTTCTTCCGACATATTCTCCTCCAAGATCAAGATG  288

Query  136  AAGACGAAGAAGAGATCTTTTGGTTTCAAACTCTCTCGTTCCATTTCGCATTTATTCGCT  195
            ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct  289  AAGACAAAGAAGAGATCTTTCGGCTTCAAACTCTCTCGTTCCATTTCCCATTTATTCGCT  348

Query  196  TTAACCTCCGATGATGTCTCTCGAGCCGACGAAGAAGAAG---TAGCAGAAGAAG-A-AG  250
            |||| ||| |||||||||| || |||||| ||||||||||   |||||||||||| | | 
Sbjct  349  TTAATCTCAGATGATGTCTTTCAAGCCGAAGAAGAAGAAGAAGTAGCAGAAGAAGGATAA  408

Query  251  C-TTCCTTTCTCC-TCTCCTCAAA-TCTCAATTGATTTCTATTACCA-AGAACATT  302
            | || || ||||| | || | ||| |||| || ||||| |||| ||| | ||||||
Sbjct  409  CCTTACTCTCTCCAT-TCATTAAAATCTCTATAGATTTATATTTCCATA-AACATT  462



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13974434222


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5