BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924029
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55221.1 | Symbols: | Pseudogene of AT1G55240 | chr1:206010... 331 3e-90
AT1G55240.1 | Symbols: | Family of unknown function (DUF716) ... 209 1e-53
AT1G55220.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 172 2e-42
> AT1G55221.1 | Symbols: | Pseudogene of AT1G55240 | chr1:20601014-20601794
FORWARD LENGTH=781
Length=781
Score = 331 bits (179), Expect = 3e-90
Identities = 284/332 (86%), Gaps = 18/332 (5%)
Strand=Plus/Plus
Query 68 GCAGTTGGTGTATGGCATTTATTCAACAACATAAAACTCTTTTGTCTCAACCCAAATACT 127
|||||||||||||| |||| ||| |||||||| ||||||||||| |||||||||||||
Sbjct 1 GCAGTTGGTGTATGTCATTCATTGAACAACATCCGACTCTTTTGTCACAACCCAAATACT 60
Query 128 TATTCTTCATCACCATGGTTCCCATCTCAC-AAGCTCAGATACTTAGAGCTTTA-CTTTA 185
| ||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||||
Sbjct 61 TTTTCTTCATCACCATGGTTCCC-GCTC-CTAAGCTCAGATACTTAGAGCTTTACCTTTA 118
Query 186 TCATGATCAGCC-TATCAATCATCACAGTTCGACAACTCTTCACTGGACCCAAAAGACAC 244
||||| || || ||||||| ||||||||||| ||||||||| |||| | | ||||||
Sbjct 119 TCATGGTC-TCCGCATCAATCCTCACAGTTCGAGAACTCTTCAATGGA--C-AGAGACAC 174
Query 245 AATCCCTTTGACCCTGATGGAACCATCCCGTCGA-G-C----CATCTCCGTAGCGTTGAA 298
| |||||||||||||||||| ||||||||||||| | | ||||||||||||||||||
Sbjct 175 AGTCCCTTTGACCCTGATGGCACCATCCCGTCGAGGTCGAGTCATCTCCGTAGCGTTGAA 234
Query 299 CATTCCATCCTCTTTATATCTTTCATAGTCTATGCCGTTTTTGCAA-TA-CTCTTCGATC 356
|||||||||||||||| ||||||||||| ||| ||||||||||| || | |||| ||
Sbjct 235 CATTCCATCCTCTTTACGTCTTTCATAGTTTATAACGTTTTTGCAAATAGC-CTTCCATG 293
Query 357 GAGTACGGCCTAGAGCAGCCGCAACCGCTAAG 388
||| | ||||||||||||||| ||| || |||
Sbjct 294 GAGCAAGGCCTAGAGCAGCCGAAACTGCGAAG 325
> AT1G55240.1 | Symbols: | Family of unknown function (DUF716)
| chr1:20604916-20606405 FORWARD LENGTH=1255
Length=1255
Score = 209 bits (113), Expect = 1e-53
Identities = 257/323 (80%), Gaps = 24/323 (7%)
Strand=Plus/Plus
Query 68 GCAGTTGG-TGTATGGCATTTATTCAACAACATAAAACTCTTTTGTCTCAACCCAAATAC 126
||| |||| | ||||||| |||||||||||||||||||||||||||||| | ||||| ||
Sbjct 145 GCACTTGGCT-TATGGCACTTATTCAACAACATAAAACTCTTTTGTCTCCATCCAAACAC 203
Query 127 TTATTC--TTCATCACCATGGTTCCCA-TCTCACAAGCTCAGATACTTAGAGCTTTACTT 183
|||| ||||||| ||||||||||| | ||| ||||||||| |||||||||| |||||
Sbjct 204 --ATTCAGTTCATCAACATGGTTCCCAATTTCA-AAGCTCAGACACTTAGAGCTCTACTT 260
Query 184 TATCATGATCAGCCTATCAATCATCA-C-AGT-TCGACA-A-CTCTTCACTGGACCCAAA 238
|||||| | | | | |||| || | | | | || | | ||||||| |||||| | |
Sbjct 261 AATCATGCT-ATC-T-TCAA-CAGCCTCCA-TATCCATGGAGCTCTTCATTGGACCTAGA 315
Query 239 AGACACAATCCCTTTGACC-CTGATGGAACCATCCCGTCGAGCCATCTCCGTAGCGTT-G 296
|||||| ||||||||||| | ||||| |||||||| |||| ||| |||| | | || |
Sbjct 316 AGACACCATCCCTTTGACGTC-GATGGTACCATCCCATCGAACCACCTCCACAAC-TTCG 373
Query 297 AACATTCCATCC-TCTTTATATCTTTCATAGTCTATGCCGTTTTTGCAATACTCTTCGAT 355
||||||| ||| ||| || || ||| |||||||||||||||| ||| || || | |||
Sbjct 374 AACATTCT-TCCATCTCCATGTCCTTCTTAGTCTATGCCGTTTTGGCATTAGTCCTGGAT 432
Query 356 CGAGTACGGCCTAGAGCAGCCGC 378
|||| |||||||||||| |||||
Sbjct 433 CGAGCACGGCCTAGAGCCGCCGC 455
> AT1G55220.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:20600883-20601436 REVERSE LENGTH=495
Length=495
Score = 172 bits (93), Expect = 2e-42
Identities = 157/186 (84%), Gaps = 12/186 (6%)
Strand=Plus/Minus
Query 211 AGTTCGACAACTCTTCACTGGACCCAAAAGACACAATCCCTTTGACCCTGATGGAACCAT 270
||||||| ||||||||| |||| | | ||||||| |||||||||||||||||| |||||
Sbjct 280 AGTTCGAGAACTCTTCAATGGA--C-AGAGACACAGTCCCTTTGACCCTGATGGCACCAT 224
Query 271 CCCGTCGA-G-C----CATCTCCGTAGCGTTGAACATTCCATCCTCTTTATATCTTTCAT 324
|||||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 223 CCCGTCGAGGTCGAGTCATCTCCGTAGCGTTGAACATTCCATCCTCTTTACGTCTTTCAT 164
Query 325 AGTCTATGCCGTTTTTGCAA-TA-CTCTTCGATCGAGTACGGCCTAGAGCAGCCGCAACC 382
||| ||| ||||||||||| || | |||| || ||| | ||||||||||||||| |||
Sbjct 163 AGTTTATAACGTTTTTGCAAATAGC-CTTCCATGGAGCAAGGCCTAGAGCAGCCGAAACT 105
Query 383 GCTAAG 388
|| |||
Sbjct 104 GCGAAG 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5