BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924031
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55230.1 | Symbols: | Family of unknown function (DUF716) ... 1395 0.0
> AT1G55230.1 | Symbols: | Family of unknown function (DUF716)
| chr1:20602819-20603924 FORWARD LENGTH=1106
Length=1106
Score = 1395 bits (755), Expect = 0.0
Identities = 914/987 (93%), Gaps = 26/987 (3%)
Strand=Plus/Plus
Query 2 TAAGGCATAAAGCCACAACATGGGAACACTTGTGGGACATGTTGCACCAGGTTTTGCCTT 61
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 58 TAAGACATAAAGCCACAACATGGGAACACTTGTGGGACATGTTGCACCGGGTTTTGCCTT 117
Query 62 CTTTACACTTGGTCTATGGCACTTATTTAACAACATAAAACTCTTTTGTCTCAGCCCAAA 121
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 118 CTTTGCACTTGGTCTATGGCACTTATTTAACAACATAAAACTATTTTGTCTCAACCCAAA 177
Query 122 CACCTTTACTTCATCACCATGGTTTCCAACTTCCAAGCTTAGATATTTAGAGCTCTACTT 181
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 178 CACCTTTACTTCATCACCATGGTTTCCAACTTCCAAGCTTAGACATTTAGAGCTCTACAT 237
Query 182 AATCAT-GTTATCTTCATCAGCCTCCATAG-CTATGGAGCTCTTCATTGGACCCAAGAGA 239
|||||| ||| | ||| ||| |||||||| || |||||||||||||||||||||| |
Sbjct 238 AATCATGGTT-TGTTCGTCAATCTCCATAGCCT-CAGAGCTCTTCATTGGACCCAAGAAA 295
Query 240 CATCAACCCTTTGACTCTGATGGTACCATCCCTTCAAACCACCTCCACAACTTTGAACAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CATCAACCCTTTGACTCTGATGGTACCATCCCTTCAAACCACCTCCACAACTTTGAACAC 355
Query 300 TCCTCTATCTCCATGTCCTTCTTAGTCTACGCGGTTTTCGCAGTAGTTCTTGATCAAGCA 359
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
Sbjct 356 TCCTCTATCTCCATGTCATTCTTAGTCTACGCGATTTTCGCAGTAGTTCTTGATCAAGAA 415
Query 360 AGGAGTATATCAACTCATGTTTCGCATGGACTGACTATACTCGTCGCATCTTCTGCCTTT 419
||| ||| ||||| | || || |||||||||||||||| ||||| |||||||||||||||
Sbjct 416 AGGCGTAGATCAAAT-AT-TT-CGCATGGACTGACTATGCTCGTTGCATCTTCTGCCTTT 472
Query 420 GCTCAACAGCTCTTCCTCTTCAATCTTCACTCTGCTGACCACATGGGCATTGAAGGACAA 479
||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 473 GCTCAACAGCTCTTCCTTTTCCATCTTCACTCTGCCGACCACATGGGCATTGAGGGACAA 532
Query 480 TACCATAAGCTCCTCCAGCTCATTATCTTCGTTTCTCTTC-TCACCAGTCTAATCGGAAT 538
|||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||
Sbjct 533 TACCATAAGCTCCTCCAGCTCATTATCTTCGTTTCT-TTCCTCACCACTCTAATCGGTAT 591
Query 539 -AGCTTTGCCCAAAAGTTTCTTGGTAAGCTTTGTCAGGTCATCAAGCATAACTTTTCAAG 597
| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 592 CA-CTTTGCCTAAAAGTTTCTTGGTAAGCTTTGTGAGGTCATCAAGCATAACTTTCCAAG 650
Query 598 GAGTGTGGTTCGTAGTGATGGGTTACATGCTTTGGACACCTAGATTGATTCCCAAGGGAT 657
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 651 GAGTGTGGTTCGTAGTGATGGGTTACATGCTTTGGACACCTAGCTTGATTCCCAAGGGAT 710
Query 658 GTTTTCTTCATGAAGAAGAAGGACACCAAGTGATTAAATGTTCCAGCGATAAAGCTTTAC 717
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 711 GTTTTCTTCACGAAGAAGAAGGACACCAAGTGATTAAATGTTCCAGCGATAAAGCTATAC 770
Query 718 ACAGGGCCAAGTCGCTAGTCAACATCGAGTTTAGTTGGTTTTTTGTTGGAATCACAATCT 777
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 771 ACAGGGCCAAGTCGCTAGTCAACATCGAGTTTAGTTGGTTCTTTGTTGGAATCACAATTT 830
Query 778 TTGTCATGTCGCT-TTACTTGATCCTGAGTGGACTTTACGGTGAAAATGCCGAGTACTCA 836
|||| |||||||| || ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 831 TTGTAATGTCGCTATT-CTTGATCCTAAGTGGGCTTTACGGTGAAAATGCCGAGTACTCA 889
Query 837 ATTCTTA-TCACTAAAGACAAAAGTGAAGAAAGTGGTGAAGAGCAACAAGACATAGAGTC 895
||||| | |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 890 ATTCT-AGTCACTAAAGACAAAGGTGAAGAAAGTGGTGAAGAGAAACAAGACATAGAGTC 948
Query 896 GCTAAAGAAAAGTAATCCAAGTTTTGTCCAGATAGGTAAACTCCTTGGAAGT-G--AAGA 952
||||||||||||||| |||||||||| | | | || |||||||||||| | ||||
Sbjct 949 GCTAAAGAAAAGTAAACCAAGTTTTGGC----T-G--AA-CTCCTTGGAAGTCGTCAAGA 1000
Query 953 CGTGTAAAGGTAATAGATTATTCGGTT 979
||| |||||||| | |||||||||||
Sbjct 1001 TGTGGAAAGGTAAGAAATTATTCGGTT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5