BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924032
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55240.1 | Symbols: | Family of unknown function (DUF716) ... 1354 0.0
> AT1G55240.1 | Symbols: | Family of unknown function (DUF716)
| chr1:20604916-20606405 FORWARD LENGTH=1255
Length=1255
Score = 1354 bits (733), Expect = 0.0
Identities = 898/973 (92%), Gaps = 29/973 (3%)
Strand=Plus/Plus
Query 1 ACATAATACAAACCCACAACATGGGATCACTTGTGGGACATGTTATACCAGGCTTTGCCT 60
||||||||||||||||||||||||||||| || | ||||||||| | ||||| |||||||
Sbjct 80 ACATAATACAAACCCACAACATGGGATCATTTTTAGGACATGTTTTGCCAGGTTTTGCCT 139
Query 61 TCTTAGCACTTGGCTTATGGCACTTATTCAACAACATAAAACTCTTCTGTCTCCATCCAA 120
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 140 TCGTAGCACTTGGCTTATGGCACTTATTCAACAACATAAAACTCTTTTGTCTCCATCCAA 199
Query 121 AGACATTCAATTCATCAACATGGTTCCCAATTTCAGAGCTCGGACACTTAGAGCTCTACT 180
| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 200 ACACATTCAGTTCATCAACATGGTTCCCAATTTCAAAGCTCAGACACTTAGAGCTCTACT 259
Query 181 TAATCATGCTATCTTCATCAGCCTCCATATCCATGGAGCTCTTCATTGGACCTAGAAGAC 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TAATCATGCTATCTTCAACAGCCTCCATATCCATGGAGCTCTTCATTGGACCTAGAAGAC 319
Query 241 ACAATCCCTTTGAC-TCTGATGGTACCATCCCATCGAACCACCTCCACAACTTCGAACAT 299
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ACCATCCCTTTGACGTC-GATGGTACCATCCCATCGAACCACCTCCACAACTTCGAACAT 378
Query 300 TCTTCCATCTCCATGTCTTTTTTAGTCTATGCCGTTTTGGCATTAGTCCTCGATAGAGCA 359
||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||
Sbjct 379 TCTTCCATCTCCATGTCCTTCTTAGTCTATGCCGTTTTGGCATTAGTCCTGGATCGAGCA 438
Query 360 CGGCCTAGACCCGCCGCTTCTGAGGGGCTAACCATGCTAGCTGCAGCCGCTGCCTTCAGT 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CGGCCTAGAGCCGCCGCTTCTGAGGGGCTAACCATGCTAGCTGCAGCCGCTGCCTTCAGT 498
Query 420 CAACAGCTACTTCTCTTCCATTTTCATTCTACCGACCACATGGGCGTTGGGGGACAATAC 479
||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 499 CAACAGCTACTTCTCTTTCATTTTCACTCTACCGACCACATGGGCGTTGAGGGACAATAT 558
Query 480 CATTTGATTCTACAAGTCGTTATCTTCGTCTCTCTCGTTACCACTATCCTGTGTATTTTC 539
||| |||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 559 CATGTGATTCTACAAGTCGTTATCTTCGTCTCTCTCCTTACCACAATCATGGGTATTTTC 618
Query 540 TTGCCGAAGAGTTTTCTGGTGAGCCTTGTGAGATCTTCAAGCATAGCCTTTCAAGGCGTG 599
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TTGCCCAAGAGTTTTCTGGTGAGCCTTGTGAGATCTTCAAGCATAGCCTTTCAAGGCGTG 678
Query 600 TGGCTCATTGTGATGGGTTGCATGCTTTACATACCGAGTTTGATCCCCAAGGGATGTTAT 659
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 679 TGGCTCATTGTGATTGGTTGCATGCTTTACACACCGAGTTTGATCCCCAAGGGATGTTAT 738
Query 660 ATTCACGATGAAATAAGACACCTAATGGTTAAATGTTCTACCGAAGAAGCTCTTCACAGA 719
|||||||||||| ||||||| |||| ||||| ||||| |||||||||||||||||||||
Sbjct 739 ATTCACGATGAAGGAAGACACATAATAGTTAAGTGTTCCACCGAAGAAGCTCTTCACAGA 798
Query 720 GCTAAGTCGTTGGTCAACCTCGAATTCAGTATTTCAGTTGGCTATTTGTTACAAACATGT 779
|||||||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct 799 GCTAAGTCGTTGGTCAACCTCGAATTCAGT-T----G--G-CTATTTGTTACAAACAC-- 848
Query 780 ACAATATTTGTTGTCACACTATATTTGATTCTCGATCGTGTTTACGGTGAAAACGTAGAG 839
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AC--TATTTGTTGTCACACTATATTTGATTCTCGATCGTGTTTACGGTGAAAACGTAGAG 906
Query 840 TACTCTATTCTAATCACCAATTATCAAACAGAACAAGATGATGAAGAACAACAA--C-A- 895
||||||| ||||| ||||||| |||||||| | |||||||||||||||||||| | |
Sbjct 907 TACTCTAGTCTAACCACCAATAATCAAACATACCAAGATGATGAAGAACAACACTTCGAA 966
Query 896 T-----T----TC-GAAT-CAAGTTTTGTCCAAATGGGTAAACTCGTTGGACATAGGCAG 944
| | || ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 967 TCGAAGTCGACTCAGAAAACAAGTTTTGTCCAAATGGGTAAACTCGTTGGACATGGGCAG 1026
Query 945 AAAATGTGAGAAA 957
|||||||||||||
Sbjct 1027 AAAATGTGAGAAA 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5