BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924035
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55260.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 957 0.0
> AT1G55260.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr1:20614633-20616435
FORWARD LENGTH=991
Length=991
Score = 957 bits (518), Expect = 0.0
Identities = 585/617 (95%), Gaps = 5/617 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAGCACAACACATCGAACCATGGAGCACTCAACAAGAAGCCTATTCATAACCATC 60
||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 136 AGAGAGAACACAACACATCGAACCATGGAGAAATCAACAAGAACCCTATTCATAACCATC 195
Query 61 GTGATAACCTCCATGTTGCTAGGGATTGGATACTCTGATATAGCTCAGGACAGAGAGGAG 120
|||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||
Sbjct 196 GTGATAACCTCCATGTTGCTAGGGTTTGGAAACTCTGATCTTGCTCAGGACAGAGAGGAG 255
Query 121 TGTACGAACCAGCTCATAGAACTCTCGACGTGTATTCCGTACGTTGGAGGAGACGCCAAG 180
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 256 TGTACGAACCAGCTCATAGAACTATCCACGTGTATTCCGTACGTTGGAGGAGACGCCAAG 315
Query 181 GCTCCAACAAAAGATTGTTGTGCAGGGTTTGGCCAAGTTATAAGAAAGAGTGAGAAGTGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GCTCCAACAAAAGATTGTTGTGCAGGGTTTGGCCAAGTTATAAGAAAGAGTGAGAAGTGT 375
Query 241 GTTTGCATATTGGTCAGAGACAAAGATGATCCTCAACTTGGTATCAAGATTAATGCATCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 376 GTTTGCATATTGGTCAGAGACAAAGATGATCCTCAACTTGGTATCAAGATTAACGCAACC 435
Query 301 CTAGCCGCTCATCTTCCCTCTGCTTGTCGTATAACGGCTCCTAACATCACCGACTGTATT 360
|||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||
Sbjct 436 CTAGCCGCTCATCTTCCCTCCGCTTGTCATATCACGGCTCCTAACATCACTGACTGTATT 495
Query 361 TCGATTCTGCATTTACCTCGAAACTCAACATTGGCTAAAGAGTTTGAGAGCTTAGGAAGG 420
|||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 496 TCGATTCTGCATCTACCTCGTAACTCAACATTGGCTAAAGAGTTTGAGAACTTAGGAAGG 555
Query 421 ATTGAAGACAATTACAACTCCACATCTACTTCACAAATTCATAAAGATGGGACAGGAGGA 480
||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 556 ATTGAAGACAACTACAACTCCACATCTCCTACACAAATTCATAAAGATGGGACAGGAGGA 615
Query 481 GGAAAAGCTGAATCAGTGAAGAGTAATGGATGGAAGAAGAAGAAGAGTTGGTTGGGTGTT 540
|||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 616 GGAAAAGCCGAACCAGTGAAGAGTAATGGATGGAAG--GA-GAAGAGTTGGTTGGGTGTT 672
Query 541 GAGCTTTTAATAT-TT-GCTAGTTTCTCTCATCTTCTTTTAATTACTTCCTCTATTTAAT 598
||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 673 GAGCTTTTAATATATTTGCTAGTTTCTCTCATCTTCTTTTAATTACTTCCTTTCTTTAAT 732
Query 599 GTTCCTTTGCTTGATTA 615
|||||||||||| ||||
Sbjct 733 GTTCCTTTGCTTTATTA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5