BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924037
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55270.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2207 0.0
> AT1G55270.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:20617954-20620136 REVERSE LENGTH=1895
Length=1895
Score = 2207 bits (1195), Expect = 0.0
Identities = 1296/1346 (96%), Gaps = 2/1346 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTTCAAGTTTTGAAGATGGATCTATCTTCTCAACGACAATCCCCAAATGGTTCTA 60
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATGAACTTCGAGTTTTGAAGATGGATCTATCTTCTCAACGACAATCCCCAAATGGTTCTA 251
Query 61 GGGGTTTTCGTCTTCAAGCTCCATTGGTGGATTCTGTTTCTTGCTATTGTAGAGTAGATT 120
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 252 GGGGTTTTCGTCTTCAAGCTCCATTGGTGGATTCTGTATCTTGTTATTGTAGAGTAGATT 311
Query 121 CTGGTCTTAAGACTGTTGTAGAAGCAAGGAAGTTTGTTCCTGGATCAAAGCTTTGTATTC 180
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 312 CCGGTCTTAAGACTGTTGTAGAAGCAAGGAAGTTTGTTCCTGGTTCAAAGCTTTGTATTC 371
Query 181 AACCTGATATCAATCCTAATGCGCATAGGCGTAAGAATTCTAAGAGGGAGAGGACGAGGA 240
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |
Sbjct 372 AACCTGATATCAATCCCAATGCTCATAGACGTAAGAATTCTAAGAGGGAGAGGACTAGAA 431
Query 241 TTCAACCTCCGCTTCTCCCCGGCCTCCCGGACGATCTAGCTGTCGCTTGCCTCATCCGTG 300
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 432 TTCAACCTCCGCTTCTCCCTGGCCTCCCTGACGATCTAGCTGTCGCTTGCCTTATCCGTG 491
Query 301 TCCCGCGTGCAGAACATAGAAAACTCAGGCTAGTGTGTAAGAGATGGTATAGGCTTGCTT 360
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 492 TTCCTCGTGCAGAACATAGAAAACTCAGGCTCGTGTGTAAGAGATGGTATAGGCTTGCTT 551
Query 361 CTGGGAACTTCTTTTACTCTCAGAGGAAGTTACTTGGGATGTCGGAAGAATGGGTTTATG 420
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 552 CTGGGAACTTCTTTTACTCTCAAAGGAAGTTACTTGGGATGTCTGAAGAATGGGTTTATG 611
Query 421 TTTTTAAAAGAGATCGCGATGGGAAGATCTCGTGGAATACGTTTGATCCTATCTCCCAGC 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 612 TTTTTAAAAGAGATCGTGATGGGAAGATCTCGTGGAATACGTTTGATCCTATCTCTCAGC 671
Query 481 TTTGGCAGCCGCTTCCACCTGTTCCAAGGGAATATTCAGAGGCTGTTGGGTTTGGTTGCG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TTTGGCAGCCGCTTCCACCTGTTCCAAGGGAATATTCAGAGGCTGTTGGGTTTGGTTGCG 731
Query 541 CTGTTTTAAGCGGTTGTCATCTTTATTTGTTTGGAGGTAAGGATCCTCTAAGAGGGTCAA 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 732 CTGTTTTAAGCGGTTGTCATCTTTATTTGTTTGGAGGTAAGGATCCTTTAAGAGGGTCAA 791
Query 601 TGAGGAGAGTCATTTTCTATAATGCGAGGACGAATAAGTGGCACAGGGCACCGGATATGC 660
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 792 TGAGGAGGGTCATTTTCTATAATGCAAGGACGAATAAGTGGCACAGAGCACCGGATATGC 851
Query 661 TTAGGAAGCGGCATTTCTTTGGCTGTTGTGTCATAAACAATTGTTTATATGTAGCGGGTG 720
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 852 TTAGGAAGCGGCATTTTTTTGGTTGTTGTGTTATAAACAATTGTTTATATGTAGCGGGTG 911
Query 721 GGGAGTGTGAAGGAATTCAAAGGACACTCCGCTCAGCTGAGGTGTATGATCCAAACAAGA 780
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 912 GGGAGTGTGAAGGAATTCAAAGGACACTTCGCTCAGCTGAGGTTTATGATCCAAACAAGA 971
Query 781 ACAGATGGAGTTTTATTGCTGATATGAGCACAGCAATGGTGCCTCTTATTGGTGTGGTTT 840
|||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 972 ACAGGTGGAGTTTTATTGCTGATATGAGTACAGCAATGGTGCCTCTGATCGGTGTGGTTT 1031
Query 841 ATGATAAAAAGTGGTTTCTCAAGGGTCTTGGGTCTCACCAACTAGTCATGAGTGAAGCTT 900
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1032 ATGACAAAAAGTGGTTTCTCAAGGGTCTTGGGTCTCACCAACTAGTAATGAGTGAAGCTT 1091
Query 901 ATGACCCAGAAGTTAATTCATGGAGCCCGGTTAGTGATGGGATGGTTGCTGGTTGGCGAA 960
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1092 ATGACCCAGAAGTTAATTCATGGAGCCCGGTTAGTGACGGGATGGTTGCTGGTTGGCGTA 1151
Query 961 ATCCGTGTACTTCTCTAAACGGTCGTCTTTACGGATTGGATTGTAGGGACGGATGCAAAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 ATCCGTGTACTTCTCTAAACGGTCGTCTTTACGGATTGGATTGTAGGGACGGATGCAAAC 1211
Query 1021 TCAGGGTATTTGATGAATCCACGGATTCATGGAACAAATTCATGGACAGTAAAGCTCATT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 TCAGGGTATTTGATGAATCCACGGATTCATGGAACAAATTCATGGACAGTAAAGCTCATT 1271
Query 1081 TGGGAAACTCAAAGTCGCTTGAAGCTGCAACTCTTGTTCCTCTACACAATAAACTTTGTA 1140
|||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1272 TGGGAAACTCGAAGTCGCTTGAAGCTGCAGCTCTTGTTCCTCTACACAATAAGCTTTGTA 1331
Query 1141 TAATCCGGAACAACATGAGCATGAGTCTGGTTGATGTCGCGAATCCTGATAAGAACAACC 1200
|||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 1332 TAATCCGGAACAACATGAGCATGAGTCTGGTTGATGTCTCGAATCCTGACAAAAACAACC 1391
Query 1201 CTCGACTGTGGGAAAACATTGCCGTAAAAGGACAGTCCAAGAGCATTCTCAGTAATATAT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 CTCGACTGTGGGAAAACATTGCCGTAAAAGGACAGTCCAAGAGCATTCTCAGTAATATAT 1451
Query 1261 GGTCGAGTATTGCAGGGAGAGCTTTGAAGAGCCATATTGTGCATTGCCAAGTACTTCAAG 1320
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1452 GGTCGAGTATTGCAGGGAGAGCTTTGAAGAGCCATATAGTGCATTGTCAAGTGCTTCAAG 1511
Query 1321 CCTGACAAAAAAT-TTCTGAAACTCA 1345
| ||||||||| | ||||||||||||
Sbjct 1512 CGTGACAAAAA-TGTTCTGAAACTCA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5