BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924040
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splici... 979 0.0
> AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing
factor 33 | chr1:20630070-20632973 FORWARD LENGTH=1267
Length=1267
Score = 979 bits (530), Expect = 0.0
Identities = 617/657 (94%), Gaps = 13/657 (2%)
Strand=Plus/Plus
Query 242 GAGATCCACGAGGGTTTGGTTTTGTTCAATTTATGGACCCTGCTGATGCTGCTGACGCAA 301
||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 343 GAGATCCGCGAGGGTTTGGGTTCGTTCAATTTATGGACCCTGCTGATGCTGCTGATGCAA 402
Query 302 AACATCACATGGATGGTTATCTTCTTCTTGGCCGTGAGTTGACTGTCGTGTTTGCAGAAG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AACATCACATGGATGGTTATCTTCTTCTTGGCCGTGAGTTGACTGTCGTGTTTGCAGAAG 462
Query 362 AGAACAGGAAGAAACCGACTGAAATGAGAGCAAGGGAGCGTGGTGGAGGAAGGAGCAGCA 421
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 463 AGAACAGAAAGAAACCGACTGAAATGAGAGCAAGGGAGCGTGGTGGAGGAAG---CAG-A 518
Query 422 GATTTCGGGATAGAAGGCGTACTCCTCCTCGTTACTACTCTCGCTCTCGTTCTCCTCCCC 481
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 519 --TTTCGGGATAGAAGACGTACTCCACCTCGTTACTACTCTCGCTCTCGTTCTCCTCCCC 576
Query 482 GC-CGACGTGATAGATCTCGGTCACGGAGCGGTGACTATTATTCTTCTCCCCCTAGAAGA 540
| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 577 -CTCGACGTGGTAGATCTCGGTCACGGAGCGGTGACTATTATTCTCCTCCCCCTAGAAGA 635
Query 541 CATCACCCAAGGTCTATCTCGCCCAGGGAAGAGCGATATGATGGGAGGAGGTCATACTCG 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CATCACCCAAGATCTATCTCGCCCAGGGAAGAGCGATATGATGGGAGGAGGTCATACTCG 695
Query 601 CGCTCACCTGCCTCTAATGGCTCAAGGGGTCGCAGTTTAACTCCGGCCAGAGGTAATAGC 660
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 696 CGCTCACCTGCCTCTGATGGCTCAAGGGGTCGCAGTTTAACTCCAGTCAGAGGTAAGAGC 755
Query 661 CGCAACTTAAGCCCCAGCCCTAGAAGAAGCATAAGCCGTAGCCCAAGAAGAAGCAGGAGC 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CGCAGCTTAAGCCCCAGCCCTAGAAGAAGCATAAGCCGTAGCCCAAGAAGAAGCAGGAGC 815
Query 721 CCGAGCCCGAAGAGAAATATGAGTC-TTAGCCCGAGAAGAAGCATAAGCCGTAGCCCTAG 779
|| ||||| || ||||||| ||| | ||||||| ||||||||||||||||||||||||||
Sbjct 816 CCAAGCCCAAAAAGAAATAGGAG-CGTTAGCCCAAGAAGAAGCATAAGCCGTAGCCCTAG 874
Query 780 AAGAAGCAGGAGCCCGAGGAGAAGCAGAAG---CTACACTCCTGAACCCGCCAGAAGCAG 836
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 875 AAGAAGCAGGAGTCCGAGGAGAAGCAGAAGAAGCTACACTCCTGAACCCGCCAGAAGCAG 934
Query 837 GAGCCAGAGCCCGCATGGGGGGCATTATGAAGAAGACCGCTCGCCAAGCCAGTGATT 893
|||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 935 GAGCCAAAGCCCGCATGGGGGCCAGTATGACGAAGACCGTTCACCAAGCCAGTGATT 991
Score = 399 bits (216), Expect = 2e-110
Identities = 234/243 (96%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1 GAGAGGTTGAAGCTTGGCTCAATGAGGGGAAGGAGCTACACCCCGTCACCACCAAGGGGT 60
||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 66 GAGAGATTGAAGCTTGACTCAATGAGGGGAAGGAGCTACACTCCGTCACCACCTAGGGGT 125
Query 61 TATGGGAGGAGGGGTCGAAGCCCAAGCCCTAGAGGCCGATATGGAGGTCGTAGCAGGGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TATGGGAGGAGGGGTCGAAGCCCAAGCCCTAGAGGCCGATATGGAGGTCGTAGCAGGGAC 185
Query 121 CTCCCAACCAGTCTTTTGGTTCGCAATCTACGCCATGATTGCAGGCAAGAAGATCTCAGG 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTCCCGACCAGTCTTTTGGTTCGCAATCTACGCCATGATTGCAGGCAAGAAGATCTCAGG 245
Query 181 AAGTCATTTGAGCAGTTTGGCCCGGTCAAGGACATTTACCTACCAAGGGATTATTATACC 240
||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 246 AAGTCGTTTGAGCAGTTTGGTCCTGTCAAGGACATTTACCTGCCAAGGGATTATTATACC 305
Query 241 GGA 243
|||
Sbjct 306 GGA 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44507454242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5