BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924043
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55330.1 | Symbols: AGP21, ATAGP21 | arabinogalactan protein... 315 1e-85
> AT1G55330.1 | Symbols: AGP21, ATAGP21 | arabinogalactan protein
21 | chr1:20648465-20648891 REVERSE LENGTH=427
Length=427
Score = 315 bits (170), Expect = 1e-85
Identities = 199/213 (93%), Gaps = 1/213 (0%)
Strand=Plus/Plus
Query 1 AAGACATCAAAGGAGAAGTAATGGAGGCAATGAAGATGAAGATGATGATGTTTGTTATGG 60
||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 62 AAGACATCAAAGGAGAATTAATGGAGGCAATGAAGATGAAGATGATGGTGTTTATTATGG 121
Query 61 TTGTTGCGGTGGCTTTTTCATCTGCGGCAGCTGCCACCGTGGAAGCTCCAGCTCCAAGCC 120
|||||||||||||||| ||| |||| | ||||| ||||| |||||||||||||||||||
Sbjct 122 TTGTTGCGGTGGCTTTCTCAGCTGCCACGGCTGCTACCGTTGAAGCTCCAGCTCCAAGCC 181
Query 121 CAACTTCTGATGCTGCTATGTTTGTACCAGCATTGTTTGCATCTGTTGTTGCTTTGGCAT 180
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 182 CAACTTCTGATGCTGCCATGTTTGTACCAGCACTGTTTGCATCTGTTGTTGCTTTGGCAT 241
Query 181 CTGGTTTCTTCTTTTGATCATTCTTTTTATTCT 213
|||||||| ||||||||||||||||||| ||||
Sbjct 242 CTGGTTTCATCTTTTGATCATTCTTTTT-TTCT 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9701675557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5