BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924050
Length=614
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55430.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 939 0.0
AT1G55420.1 | Symbols: EDA11 | Cysteine/Histidine-rich C1 domai... 411 5e-114
AT5G42280.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 243 2e-63
AT1G55410.1 | Symbols: | pseudogene, CHP-rich zinc finger prot... 213 2e-54
AT1G55380.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 152 4e-36
AT1G55390.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 119 4e-26
AT1G55440.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 86.1 4e-16
> AT1G55430.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:20697649-20699622 REVERSE LENGTH=1974
Length=1974
Score = 939 bits (508), Expect = 0.0
Identities = 592/629 (94%), Gaps = 19/629 (3%)
Strand=Plus/Plus
Query 1 AACCACACCCTCTTTATTTTATGCCACCTCCTTATTTAACTAGAACTAAACCTCCATGTC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 5 AACCACACCCTCTTTATTTTGTGCCACCTCCTTATTTAACTAGAACTAAACCTCCATGTC 64
Query 61 GTCTGTCTGATCCGGCTCAGCCCCACAAGCTTTGCCGACGGCGACGACCAACTCATCCTC 120
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 65 GTCTGTCCGATCCGGCTCAGCCCCACAAGCTTTGCCGACGGCGACAACCAACTCATCCTC 124
Query 121 CACTTTCTATCTGCTTTACGTGCAAAGGCAAACACTTGAAGCGCAGTAAATACTATTACT 180
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 125 CACTTTCTATCTGCTTTACGTGCAAAGGCAAACACTTGAAGCGCAGTAAGTATTATTACT 184
Query 181 ACTGTGCTACTTGCAATTTGGAATTTCACAGAGGTTGTCACATCTTTCTGCCGGAGATCA 240
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 185 ACTGTGCTACTTGCAATTTGGAATTTCACAGAGGCTGTCACGTCTTTCTGCCGGAGATCA 244
Query 241 GAAGCGCTTTTCATCCCTCTCACCCCCTCACCTTCACCGCCTTAGATCCTGAATTTAATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GAAGCGCTTTTCATCCCTCTCACCCCCTCACCTTCACCGCCTTAGATCCTGAATTTAATG 304
Query 301 CTTCTATCATACACCAAAATTGGAAGGACAGCTCCGCTTCAGAGGAATCTTCCGAAGAAT 360
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 305 CTTCTATCATACACCAAAATTGGAGGGACAGCTCCGCTTCAGAGGAATCTTCCGAAGAGT 364
Query 361 TGATAAACGAAGTTGTTGACTATGATCATGAAGACGATGGTGATGATGCTGTTGCTAATG 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 365 TGATAAACGAAGTTGTTGACTATGATCATGAAGACGCTGGTGATGATGCTGTTGCTAATG 424
Query 421 AAGAGGATGATGACGATAATGGG------GATG--GA-AATGGCGGTGGCGATG----T- 466
|||| |||||||| ||| || |||| || ||||||||||||| || |
Sbjct 425 AAGACGATGATGAAGATGCTGTTCCTAATGATGACGATAATGGCGGTGGCGGTGGCGATA 484
Query 467 TT-ATGCTGTCGCTTATAATGATGGTGCCTCTTTGTCCTATATATGGAAATCACCTGAAA 525
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 485 TTTATGCTGTCGCTTATAATGATGGTGCCTCTTTGTCCTAT----GGAAATCACCTGAAA 540
Query 526 TGCAAATGTTGTGCTTCTCCTTTAGAAAAGCTATATTATCATTGTTCTATCTGCAAGTTC 585
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TGCAAATGTTGTGCTTCTCCTTTAGAAAAGCTATATTATCATTGTTCTACCTGCAAGTTC 600
Query 586 AATCTTAACTTGACTTGCTCGATGAGACC 614
|||||||||||||||||||||||||||||
Sbjct 601 AATCTTAACTTGACTTGCTCGATGAGACC 629
> AT1G55420.1 | Symbols: EDA11 | Cysteine/Histidine-rich C1 domain
family protein | chr1:20691775-20693952 REVERSE LENGTH=2178
Length=2178
Score = 411 bits (222), Expect = 5e-114
Identities = 308/349 (88%), Gaps = 8/349 (2%)
Strand=Plus/Plus
Query 24 CCACCTCCTTATTTAACTAGAACTAAACCTCCATGTCGTCTGTCTGATCCGGCTCAGCCC 83
||||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 10 CCACCTCCTCATTTTTCTAGAGCTAAACCTCCATGTCGTCTGTCCGATCCGGCTCAGCCC 69
Query 84 CACAAGCTTTGCCGACGGCGACGACCAACTCATCCTCCACTTTCTATCTGCTTTACGTGC 143
||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||
Sbjct 70 CACAAGCTTTGCCGACGGCGACGACCATCTTATCCTCCACTTTCCATCTGCTTTACGTGC 129
Query 144 AAAGGCAAACACTTGAAG-CGCAGTAAATACTATTACTACTGTGCTACTTGCAATTTGGA 202
|||||||| || |||| | | |||| |||||||||||| ||||||||||||||||||||
Sbjct 130 AAAGGCAAGCAATTGAGGTC-CAGTGCATACTATTACTATTGTGCTACTTGCAATTTGGA 188
Query 203 ATTTCACAGAGGTTGTCACATCTTTCTGCCGGAGATCAGAAGCGCTTTTCATCCCTCTCA 262
||| |||||||||||||||||||||||||||| ||| |||||| ||||||| ||||||||
Sbjct 189 ATTCCACAGAGGTTGTCACATCTTTCTGCCGGTGATAAGAAGCTCTTTTCACCCCTCTCA 248
Query 263 CCCCCTCACCTTCACCGCCTTAGATCCTGAATTTAATGCT-TCTATCATACACCAAA-AT 320
||| ||||||||| | ||| ||||||| ||||| ||| | ||||| |||| | ||| ||
Sbjct 249 CCCTCTCACCTTCTTCTCCTCAGATCCTAAATTTGATG-TATCTATAATAC-CTAAATAT 306
Query 321 TGGA-AGGACAGCTCCGCTTCAGAGGAATCTTCCGAAGAATTGATAAAC 368
|||| || ||||||||||| |||| |||||||| || |||| |||||||
Sbjct 307 TGGAGAG-ACAGCTCCGCTACAGAAGAATCTTCAGATGAATCGATAAAC 354
Score = 141 bits (76), Expect = 8e-33
Identities = 152/185 (82%), Gaps = 19/185 (10%)
Strand=Plus/Plus
Query 432 GACGATAATGGGGATGGAAATGGCGGTGGCGATGTTTATGCTGTCGCTTATAATGATGGT 491
|||||| ||||| |||| ||||||| |||||||||| |||| | | || ||| |
Sbjct 532 GACGATGATGGGAATGGCAATGGCGCTGGCGATGTTCATGC--T-G---ATGGTGA--G- 582
Query 492 GCCTCTTTGTCCTATATATGGAAATCACCTGAAATGCAAATGTTGT-GCTTCTCCTTTAG 550
|||||||| ||| ||||||||||||| ||||||||||||||| | | |||||||
Sbjct 583 GCCTCTTTATCC----GATGGAAATCACCTAAAATGCAAATGTTGTGGGGT-TCCTTTAC 637
Query 551 AAAAG-CTATATTATCATTGTTCTATCTGCAAGTTCAATCTTAACTTG-ACTTGCTCGAT 608
||| | | |||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 638 AAATGAC-ATATTATCATTGTTCTATCTGCAAGTTCAATCTTAACTTGGA-TTGCTCGAT 695
Query 609 GAGAC 613
|||||
Sbjct 696 GAGAC 700
> AT5G42280.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr5:16905202-16908007 REVERSE LENGTH=2368
Length=2368
Score = 243 bits (131), Expect = 2e-63
Identities = 468/621 (75%), Gaps = 61/621 (10%)
Strand=Plus/Plus
Query 27 CCT-CCTTATTTAACTAGAACTAAACCTC-CATGTCGTCTGTCTGATCCGGCTCAGCCCC 84
||| |||| ||| ||| | ||||||| | |||||||||||| |||||||||||||| |
Sbjct 130 CCTCCCTT-TTTTTCTACATCTAAACC-CAAATGTCGTCTGTCCGATCCGGCTCAGCCGC 187
Query 85 ACAAGCTTTGCCGACG-GCGACGACC-AACTCATCCTCCACTTTCTATCTGCTTTACGTG 142
||||||||||||| || | || ||| ||||||||| ||||||||| |||||| ||||
Sbjct 188 ACAAGCTTTGCCGGCGTG-GA-TACCGTTCTCATCCTCGACTTTCTATGTGCTTTTCGTG 245
Query 143 CAAAGGCAA--ACACTTGAAGCGCAGTAAATACTATTACTACTGTGCTACTTGCAATTTG 200
||||||||| | | | |||| ||||| |||||||||||||||| ||| ||||| |||
Sbjct 246 CAAAGGCAAGGATA-TGGAAG-ACAGTAGGTACTATTACTACTGTGTTACATGCAAATTG 303
Query 201 GAATTTCACAGAGGTTGTCACATCTTTCTGCCGGAGATCAGAAGCGC--TTTTCATCCCT 258
||||| ||||||||||||||| |||||| |||||||| | || | | |||||| ||||
Sbjct 304 GAATTCCACAGAGGTTGTCACGTCTTTCCACCGGAGAT-A-AAACACATTTTTCACCCCT 361
Query 259 CTCACCCCCTCACCT-TCACCGCCTTAGATCCTGAATTTAATGCTTCTATCATACACCAA 317
||||||| || | || ||| || ||||||| || ||| || || | || || || |
Sbjct 362 CTCACCCTCT-AACTCTCATTTCCGTAGATCC-GACTTT--TGATT-TTTC--ACCCCGA 414
Query 318 AATTGGAAGGAC-AGCTCCGCTTCAGAGGAATC--T-TCCGAAGAATTGATAAACGAAGT 373
|| ||||| ||| || ||| || |||| ||||| | | |||| ||||| | | | |
Sbjct 415 AACTGGAAAGACAAG-TCCTCTACAGAAGAATCGATATATGAAG--TTGAT-GATG-A-T 468
Query 374 TGT--TGACTATG--ATC-AT-GAA-GACGATGGTGATGATGCTGTTGCTAATGAAGAGG 426
||| ||| | | | | || || |||||| | || || || || | |||| || |
Sbjct 469 TGTGAAGACGACGACAACAATATAATGACGATAATAATAATAATGATGATGATGATGATG 528
Query 427 ATGATGACGATAATGGGGAT---G--GA-AATGGCGGTGGCGATGTTTATGCTG-TCGCT 479
||||||| ||| ||| ||| | || ||| | || |||| | ||| || | | |
Sbjct 529 ATGATGATGATGATGATGATAACGATGATGATGTTGTTGATGATGATGATGATGAT-GAT 587
Query 480 TATAATGATGGTGCCT-CTTTGTCCTATAT-ATGGAAATCACCTGAAATGCAAATGTTGT 537
|| |||||| || | | ||| ||| | |||||||||||||||||||||||||||||
Sbjct 588 GATGATGATGATGATTGC-CTGT-TTATCTGATGGAAATCACCTGAAATGCAAATGTTGT 645
Query 538 --GCTTCTC-CTTTAGAAAAGCTATATTATCATTGTTCTATCTGCAAGTTCAATCTTAAC 594
| ||| | || | ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 646 CAGGTTC-CACT--ACAAAAGGTATATTATCATTGTTCTATCTGCAAGTTCTATCTTAA- 701
Query 595 TT-GACTTGCTCGATGAGACC 614
| ||||||||||||||||||
Sbjct 702 TGCGACTTGCTCGATGAGACC 722
> AT1G55410.1 | Symbols: | pseudogene, CHP-rich zinc finger protein,
putative, similar to putative CHP-rich zinc finger protein
GB:CAB77744 GI:7268217 from (Arabidopsis thaliana) | chr1:20688614-20691034
REVERSE LENGTH=2421
Length=2421
Score = 213 bits (115), Expect = 2e-54
Identities = 212/257 (82%), Gaps = 13/257 (5%)
Strand=Plus/Plus
Query 17 TTTTATGCCACCTCCTTATTTAACTAGAACTAAACCTCCATGTCGTCTGTCTGATCCGGC 76
||||| ||||||||||||||| ||| | || ||||| |||||||| |||| ||||||||
Sbjct 174 TTTTAAGCCACCTCCTTATTTTTCTACATCTGAACCTACATGTCGTTTGTCCGATCCGGC 233
Query 77 TCAGCCCCACAAGCTTTGCCGACGGCGACGACCAACTCATCCTCCACTTTCTATCTGCTT 136
||| ||||||| ||||||||| ||| ||| || | ||||| ||||||||||||||||||
Sbjct 234 TCAACCCCACATGCTTTGCCGGCGGAGACCACGATCTCATGGTCCACTTTCTATCTGCTT 293
Query 137 TACGTGCAAAGGCAAACACTTGAAGCGCAGTAAATACTATTACTACTGTGCTACTTGCAA 196
| ||| || | || ||| || |||||| |||||||||||||||||||||||||||
Sbjct 294 T---TGC-AA-G----CATTTGGAGGGCAGTATATACTATTACTACTGTGCTACTTGCAA 344
Query 197 TTTGGAATTTCACAGAG-GTTGTCACATCTTTCTGCCGGAGATCAGA-AGCGCTTTTCAT 254
||||||||| |||| | || ||||| ||||| |||||||||| ||| | | |||||||
Sbjct 345 TTTGGAATTCCACAAAATGT-GTCACTTCTTTTTGCCGGAGATAAGACACC-CTTTTCAC 402
Query 255 CCCTCTCACCCCCTCAC 271
||||| ||||| |||||
Sbjct 403 CCCTCCCACCCTCTCAC 419
> AT1G55380.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:20676622-20678607 REVERSE LENGTH=1986
Length=1986
Score = 152 bits (82), Expect = 4e-36
Identities = 123/141 (87%), Gaps = 10/141 (7%)
Strand=Plus/Plus
Query 477 GCTTATAATGATGGTGCCTCTTTGTCCTATATATGGAAATCACCTGAAATGCAAATGTTG 536
||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||
Sbjct 451 GCTAATAATGATGGTGCCTCTTTATCC----GATGGAAATCACTTGAAATGCAAATGTTG 506
Query 537 TGC--TTCTCCTTTAGAAAAGCTATATTATCATTGTTCTATCTGCAAGTTCAATCTTAAC 594
| | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 507 T-CAGGT-TCCTTTAGAAAAGATATATTATCATTGTTCTATCTGCAAGTTCAATCTTAAC 564
Query 595 TTG-ACTTGCTCGATGAGACC 614
|| | | |||||||||||||
Sbjct 565 GTGGAAT-GCTCGATGAGACC 584
> AT1G55390.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:20680876-20683043 REVERSE LENGTH=2168
Length=2168
Score = 119 bits (64), Expect = 4e-26
Identities = 90/102 (88%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 515 ATCACCTG-AAATGCAAATGTTGTGC-TTCTCCTTTAGAAAAGCTATATTATCATTGTTC 572
|||||| | ||||||||||||||| | ||||||| ||||| || |||||||||||||
Sbjct 611 ATCACC-GCAAATGCAAATGTTGT-CAAGATCCTTTAAAAAAGGTACATTATCATTGTTC 668
Query 573 TATCTGCAAGTTCAATCTTAACTTGACTTGCTCGATGAGACC 614
|||||||||||||||||||||| ||| |||||||||||||||
Sbjct 669 TATCTGCAAGTTCAATCTTAACCTGAGTTGCTCGATGAGACC 710
> AT1G55440.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:20701499-20703460 REVERSE LENGTH=1962
Length=1962
Score = 86.1 bits (46), Expect = 4e-16
Identities = 61/68 (90%), Gaps = 2/68 (3%)
Strand=Plus/Plus
Query 544 CCTTTAGAAAAG-CTATATTATCATTGTTCTATCTGCAAGTTCAATCTTAACTTGACTTG 602
||||| || ||| | ||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 490 CCTTTGGACAAGAC-ATATTATCATTGTTCTATCTGCAAGTTCAATCTCAACTTGCCCTG 548
Query 603 CTCGATGA 610
||||||||
Sbjct 549 CTCGATGA 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29587912583
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5