BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924051
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55450.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 1312 0.0
> AT1G55450.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:20705080-20706893
REVERSE LENGTH=1225
Length=1225
Score = 1312 bits (710), Expect = 0.0
Identities = 776/808 (96%), Gaps = 4/808 (0%)
Strand=Plus/Plus
Query 171 CTTGCAGAGTATTTCGAGAAAGTTATTGCAACCGACATAAACGAAGCACAGTTAAAACGA 230
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 246 CTTGCAGAGTATTTCGAGAAAGTTACAGCAACCGACATAAACGAAGCACAGTTAAAACGA 305
Query 231 GCGGTAAAACACGAAAGAATCAGTTACCATCACACTCCGACAACAATGTCCGAAGACCAA 290
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 306 GCGGTAAAACACGAAAGAATCAGTTACCATCACACTCCCACAACAATGTCCGAAGACCAA 365
Query 291 ATGGTTGCTCTAGTCGGCGGAGATAACTCTGTTGATCTAATCGTGGCAGCACAAGCCGTT 350
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 366 ATGGTTGCTCTAGTCGGCGGAGATAACTCCGTTGATCTAATCGTGGCAGCACAAGCCGTT 425
Query 351 CACTACTTCGATCTCGCACCATTCTACAACGTAGCAAAACGTGTTCTTCGCAAAGAAGGA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CACTACTTCGATCTCGCACCATTCTACAACGTAGCAAAACGTGTTCTTCGCAAAGAAGGA 485
Query 411 GGATTAATCGCAGTTTTTGTCTACAACGACATAATCATCTCCCCTGAAGTTGATTCCATC 470
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 486 GGATTAATCGCAGTTTTTGTCTACAACGACATAATCATCTCTCCTGAAGTTGATTCCATC 545
Query 471 ATGAAACGTCTCGTGGACTCCACGTTTCCGTTTAGAACTCCGGTAATGAATCTTGCTTTC 530
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 546 ATGAAACGTCTTGTGGACTCCACGTTCCCGTTTAGAACTCCTGTAATGAATCTTGCTTTC 605
Query 531 GACGGTTACAAAACGTTGCCGTTTCCGTTTGAAAGTATAGGGATGGGGTCAGAAGGGAAG 590
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 606 GACGGTTATAAAACGTTGCCGTTTCCGTTTGAAAGTATAGGGATGGGATCAGAAGGGAAG 665
Query 591 CCTATAATGCTTGACATTCCTCATAAGCTCTCGCTTAAAGGGTTTATCGGTTTCTTGAGA 650
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 666 CCTATAATGCTTGACATTCCTCATAAGCTATCGCTTAAAGGGTTTATCGGTTTCTTGAGA 725
Query 651 TCGTGGCAACCCGCAATGAAAGCTAAAGAACGAGGAGTTGAGCTTGTAACTGAAGATTTG 710
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 726 TCGTGGCAGCCCGCAATGAAAGCTAAAGAACGTGGAGTTGAGCTTGTGACTGAAGATTTG 785
Query 711 ATCTCTAAGTTTGAAGAAGCTTGGGGTGATGATGATGATGTTAAAGATATTTTCTACAAA 770
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 ATCTCCAAATTTGAAGATGCTTGGGGTGATGATGATGATGTTAAAGATATTTTCTACAAA 845
Query 771 GCTCATATGATTGTTGGAAAACTTTCGGCTTCAGATATAGAGCGGCATCGAAAGAGATTT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GCTCATATGATTGTTGGAAAACTTTCGGCTTCAGATATAGAGCGGCATCGAAAGAGATTT 905
Query 831 GA-ATCGAACTGTGTAGTTGCGACACTAAAGGAT-AGTAACAACTCGGCTGTTATTGCCT 888
|| | ||||||| |||||| | |||||||||||| | ||||||||||||||||||||| |
Sbjct 906 GATA-CGAACTGCGTAGTTACAACACTAAAGGATCA-TAACAACTCGGCTGTTATTGCTT 963
Query 889 CAGTGACGGCTGCTGCATTTGCTGGAGTGGCGGCTTATTGTGCCTATTCTGCAAGGAAGA 948
||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 964 CAGTGACTGCTGCTGCATTTGCTGGAGTGGCGGCTTACTGTGCTTACTCTGCAAGGAAGA 1023
Query 949 ACACTTAGATCCTTTGGTGGACAAAGAA 976
||| |||||||||||| ||||||||||
Sbjct 1024 ACAGTTAGATCCTTTGAAGGACAAAGAA 1051
Score = 281 bits (152), Expect = 7e-75
Identities = 165/171 (96%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 2 AAGAAAACAGAG--GAAAACAATGGCTGCCTTGTCGGATAAGTTAGCGGATGCTTACCAG 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 48 AAGAAAACAGAGAAAAAAACAATGGCTGCCTTGTCGGATAAGTTAGCGGATGCTTACCAG 107
Query 60 AACGCAAGGCCGAGATATCCGATCGATTGGTTCACTAAACTTGCTGCTCGAACCGGTCAG 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 108 AACGCAAGGCCGAGATATCCGATCGATTGGTTCACGAAACTTGCTGCTCGAACCGGTCAG 167
Query 120 CACAAATCAGCTTGGGATGTCGGTACTGGCAACGGTCAGGCAGCTATTGGT 170
|||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 168 CACAAATCAGCTTGGGATGTTGGTACTGGCAACGGTCAAGCAGCTATTGGT 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47772673797
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5