BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924054

Length=580
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55460.1 | Symbols:  | DNA/RNA-binding protein Kin17, conser...   817    0.0   
  AT5G51795.1 | Symbols:  | DNA/RNA-binding protein Kin17, conser...   396    1e-109


> AT1G55460.1 | Symbols:  | DNA/RNA-binding protein Kin17, conserved 
region | chr1:20707478-20709024 FORWARD LENGTH=1547
Length=1547

 Score =  817 bits (442),  Expect = 0.0
 Identities = 534/575 (93%), Gaps = 19/575 (3%)
 Strand=Plus/Plus

Query  1    GAAACAATGCCGAGACGAGAATGGATTCAAGTGT--TTGTATGAGCGAATCTCACCAGAG  58
            ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct  185  GAAACAATGCCGAGACGAGAATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGAG  244

Query  59   GCAGATGCAAGTTTTTGGCCAGAATCCGACTCGTGTTGTTGATGGTTACTCTGAAGAGTT  118
            |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct  245  GCAGATGCAAGTTTTTGGGCAGAATCCGACTCGTGTTGTCGATGGTTACTCTGAAGAATT  304

Query  119  CGAGCAGACGTTTCTCGATCTGATGCGGCGGAGCCACCGCTTCTCTCGTATCGCCGCCAC  178
            ||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct  305  CGAGCAGACGTTTCTCGATCTGATGAGGCGGAGCCACCGTTTCTCTCGTATCGCTGCCAC  364

Query  179  TGTTGTTTACAATGAGTATATTAACGATAGACATCATGTCCATATGAATTCCACGGAGTG  238
            |||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct  365  TGTTGTCTACAATGAGTATATTAACGATAGACATCATGTTCACATGAATTCGACGGAGTG  424

Query  239  GGCGACGTTGACGGAGTTCATAAAGCATCTTGGGAAAACTGGTAAGTGTAAGGTTGAGGA  298
            |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct  425  GGCGACGTTGACGGAGTTTATCAAGCATCTTGGGAAAACTGGTAAGTGTAAGGTTGAAGA  484

Query  299  AACTCCGAAAGGTTGGTTTATTACTTATATAGATAGAGATTCTGAGACTTTGTTTAagga  358
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  AACTCCTAAAGGTTGGTTTATTACTTATATAGATAGAGATTCTGAGACTTTGTTTAAGGA  544

Query  359  gaggttgaagaacaagagagttaagagtgatttagctgaggaggagaaacaagagagaga  418
            |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  545  GAGGTTGAAGAATAAGAGAGTTAAGAGTGATTTAGCTGAGGAGGAGAAGCAAGAGAGGGA  604

Query  419  gattcaga-agcagattgagagagctgctgagaAGTCGAATGCTGGTGGTGGTGAAGGTG  477
            |||||||| | ||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct  605  GATTCAGAGA-CAGATTGAGAGAGCTGCTGAGAAATTGAATGGTGGTGGTGGTGAAGGTG  663

Query  478  AAACAAGTGGTAA--A-GAAGTTG---ATGATG---A-GA--AGA--AA-AAAGATGAAG  522
            |||| ||||||||  | |||||||   ||||||   | ||  |||  || ||||||||||
Sbjct  664  AAACCAGTGGTAATGATGAAGTTGTGGATGATGGTGATGATGAGAGGAAGAAAGATGAAG  723

Query  523  ACTTGAGGTTGAAGAGTGGGGTTAAGGTTGGATTT  557
            |||||||||||||||||||||| ||||||||||||
Sbjct  724  ACTTGAGGTTGAAGAGTGGGGTCAAGGTTGGATTT  758


> AT5G51795.1 | Symbols:  | DNA/RNA-binding protein Kin17, conserved 
region | chr5:21043083-21044194 REVERSE LENGTH=1044
Length=1044

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 259/281 (92%), Gaps = 2/281 (1%)
 Strand=Plus/Plus

Query  1    GAAACAATGCCGAGACGAGAATGGATTCAAGTGT--TTGTATGAGCGAATCTCACCAGAG  58
            ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |
Sbjct  144  GAAACAATGCCGAGACGAGAATGGATTCAAGTGTCATTGTATGAGCGAATCTCACCAGCG  203

Query  59   GCAGATGCAAGTTTTTGGCCAGAATCCGACTCGTGTTGTTGATGGTTACTCTGAAGAGTT  118
             |||||||||||||| || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct  204  TCAGATGCAAGTTTTGGGTCAGAATCCGACTCGTGTTGTTAATGGTTACTCTCAAGAGTT  263

Query  119  CGAGCAGACGTTTCTCGATCTGATGCGGCGGAGCCACCGCTTCTCTCGTATCGCCGCCAC  178
            ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct  264  CGAGCAGACGTTTCTCGATCTGATGCGGCGGAGCCACCGATTCTCTCGTGTCGCCGCCAC  323

Query  179  TGTTGTTTACAATGAGTATATTAACGATAGACATCATGTCCATATGAATTCCACGGAGTG  238
            |||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||  ||||
Sbjct  324  TGTTGTCTACAATGAGTATATTAACGATAGACTTCATGTTCATATGAATTCGACAAAGTG  383

Query  239  GGCGACGTTGACGGAGTTCATAAAGCATCTTGGGAAAACTG  279
            ||| || ||||| ||||| |||||| |||| ||||||||||
Sbjct  384  GGCAACTTTGACTGAGTTTATAAAGTATCTAGGGAAAACTG  424



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27879951585


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5