BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924060
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55510.1 | Symbols: BCDH BETA1 | branched-chain alpha-keto a... 1796 0.0
AT3G13450.1 | Symbols: DIN4 | Transketolase family protein | ch... 1068 0.0
> AT1G55510.1 | Symbols: BCDH BETA1 | branched-chain alpha-keto
acid decarboxylase E1 beta subunit | chr1:20723302-20725668
FORWARD LENGTH=1402
Length=1402
Score = 1796 bits (972), Expect = 0.0
Identities = 1053/1093 (96%), Gaps = 1/1093 (0%)
Strand=Plus/Plus
Query 1 TTGTTGGTGGGTTTTGTGTAAATGGCGGCTCTTTTAGGCAGATCCTTCCGGAAACTGAGT 60
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 161 TTGTTGGTGGG-TTTGTGTAAATGGCGGCTCTTTTAGGCAGATCCTGCCGGAAACTGAGT 219
Query 61 TTTCCGAGCTTGAGTCACGGAGCTAGGAGGGTATCGACGGAAACTGGGAAACCATTGAAT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 220 TTTCCGAGCTTGAGTCACGGAGCTAGGAGGGTATCGACGGAAACTGGAAAACCATTGAAT 279
Query 121 CTATACTCTGCTATTAATCAAGCGCTTCACATCGCTTTGGATACCGATCCTCGGTCTTAT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 280 CTATACTCTGCTATTAATCAAGCGCTTCACATCGCTTTGGACACCGATCCTCGGTCTTAT 339
Query 181 GTGTTTGGGGAAGATGTTGGCTTTGGTGGAGTCTTTCGCTGCACAACTGGTTTAGCTGAA 240
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 340 GTCTTTGGGGAAGACGTTGGCTTTGGTGGAGTCTTTCGCTGTACAACAGGTTTAGCTGAA 399
Query 241 CGATTCGGGAAAAACCGCGTCTTCAATACTCCTCTTTGTGAGCAGGGCATTGTTGGATTT 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CGATTCGGGAAAAACCGTGTCTTCAATACTCCTCTTTGTGAGCAGGGCATTGTTGGATTT 459
Query 301 GGCATTGGTCTAGCAGCAATGGGAAATCGAGCAATTGTGGAGATTCAGTTTGCGGATTAT 360
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 460 GGCATTGGTCTAGCAGCAATGGGTAATCGAGCAATTGTAGAGATTCAGTTTGCAGATTAT 519
Query 361 ATATATCCTGCTTTTGATCAGATTGTTAATGAAGCGGCAAAATTCAGATACCGAAGTGGT 420
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 520 ATATATCCTGCTTTTGATCAGATTGTTAATGAAGCTGCAAAGTTCAGATACCGAAGTGGT 579
Query 421 AACCAATTCAACTGTGGAGGACTTACGATAAGAGCACCATATGGAGCAGTTGGTCATGGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AACCAATTCAACTGTGGAGGACTTACGATAAGAGCACCATATGGAGCAGTTGGTCATGGT 639
Query 481 GGACATTACCATTCACAATCCCCTGAAGCTTTCTTTTGCCATGTTCCTGGTATTAAGGTT 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 640 GGACATTACCATTCACAATCCCCTGAAGCTTTCTTTTGCCATGTCCCTGGTATTAAGGTT 699
Query 541 GTTATCCCTCGAAGTCCACGAGAAGCAAAGGGACTGTTGTTGTCATGTATCCGTGATCCA 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTTATCCCTCGGAGTCCACGAGAAGCAAAGGGACTGTTGTTGTCATGTATCCGTGATCCA 759
Query 601 AATCCCGTTGTCTTCTTCGAACCAAAGTGGCTGTATCGTCAAGCAGTAGAAGAAGTCCCT 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 AATCCCGTTGTTTTCTTCGAACCAAAGTGGCTGTATCGTCAAGCAGTAGAAGAAGTCCCT 819
Query 661 GAGCATGACTATATGATACCTTTATCAGAAGCCGAGGTTATAAGAGAAGGCAATGACATA 720
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 820 GAGCATGACTATATGATACCTTTATCAGAAGCAGAGGTTATAAGAGAAGGCAATGACATT 879
Query 721 ACCCTTGTTGGATGGGGAGCTCAGCTTACCATTATGGAACAAGCTTGTCTGGACGCAGAA 780
|| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 880 ACACTGGTTGGATGGGGAGCTCAGCTTACCGTTATGGAACAAGCTTGTCTGGACGCGGAA 939
Query 781 AAGGAAGGAATATCATGTGAACTGATAGATCTCAAGACTTTGCTTCCTTGGGATAAAGAA 840
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 940 AAGGAAGGAATATCATGTGAACTGATAGATCTCAAGACACTGCTTCCTTGGGACAAAGAA 999
Query 841 ACCGTCGAGGCCTCGGTTaaaaaaaCTGGAAGACTTCTTATAAGCCATGAAGCTCCTGTA 900
||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1000 ACCGTTGAGGCTTCAGTTAAAAAGACTGGCAGACTTCTTATAAGCCATGAAGCTCCTGTA 1059
Query 901 ACAGGAGGTTTTGGAGCAGAGATCTCTGCAACAATCCTCGAACGTTGCTTTTTAAAGTTA 960
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1060 ACAGGAGGTTTTGGAGCAGAGATCTCTGCAACAATTCTGGAACGTTGCTTTTTGAAGTTA 1119
Query 961 GAAGCTCCAGTAAGCAGAGTTTGTGGACTGGATACTCCATTTCCTCTTGTGTTTGAGCCA 1020
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1120 GAAGCTCCAGTAAGCAGAGTTTGTGGTCTGGATACTCCATTTCCTCTTGTGTTTGAACCA 1179
Query 1021 TTCTACATGCCCACCAGGAACAAGATATTGGACGCGATCAAATCGACTGTGAATTACTAG 1080
|||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1180 TTCTACATGCCCACCAAGAACAAGATATTGGATGCAATCAAATCGACTGTGAATTACTAG 1239
Query 1081 CCGTTCTATCTGT 1093
|||| ||||||||
Sbjct 1240 CCGTACTATCTGT 1252
> AT3G13450.1 | Symbols: DIN4 | Transketolase family protein |
chr3:4382198-4384436 REVERSE LENGTH=1360
Length=1360
Score = 1068 bits (578), Expect = 0.0
Identities = 853/988 (86%), Gaps = 10/988 (1%)
Strand=Plus/Plus
Query 100 GAAACTGGGAAA-CCATTGAATCTATACTCTGCTATTAATCAAGCGCTTCACATCGCTTT 158
|||| ||| ||| | | |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 GAAAGTGGTAAATCGA-TGAATCTATACTCTGCTATTAATCAAGCTCTTCACATCGCTTT 296
Query 159 GGATACCGATCCTCGGTCTTATGTGTTTGGGGAAGATGTTGGCTTTGGTGGAGTCTTTCG 218
|| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||
Sbjct 297 AGAGACCGATCCTCGGTCTTATGTTTTTGGGGAAGATGTTGGATTTGGTGGTGTCTTCCG 356
Query 219 CTGCACAACTGGTTTAGCTGAACGATTCGGGAAAAAC-CGCGTCTTCAATACTCCTCTTT 277
|| ||||| || ||||||||||| || |||||| | || || ||||| |||||||| |
Sbjct 357 ATGTACAACAGGATTAGCTGAACGTTTTGGGAAAT-CTCGAGTTTTCAACACTCCTCTCT 415
Query 278 GTGAGCAGGGCATTGTTGGATTTGGCATTGGTCTAGCAGCAATGGGAAATCGAGCAATTG 337
| ||||| ||||||||||| |||||||||||| |||| |||||||||||||||| ||||
Sbjct 416 GCGAGCAAGGCATTGTTGGCTTTGGCATTGGTTTAGCTGCAATGGGAAATCGAGTTATTG 475
Query 338 TGGAGATTCAGTTTGCGGATTATATATATCCTG-CTTTTGATCAGATTGTTAATGAAGCG 396
||| |||||||||||||||||||| | ||| | |||||||||||||||||||||| ||
Sbjct 476 CGGAAATTCAGTTTGCGGATTATATTT-TCCCGGCTTTTGATCAGATTGTTAATGAGGCT 534
Query 397 GCAAAATTCAGATACCGAAGTGGTAACCAATTCAACTGTGGAGGACTTACGATAAGAGCA 456
||||| ||||||||||||||||| ||||| || |||||||||||||| || || || |||
Sbjct 535 GCAAAGTTCAGATACCGAAGTGGAAACCAGTTTAACTGTGGAGGACTCACTATTAGGGCA 594
Query 457 CCATATGGAGCAGTTGGTCATGGTGGACATTACCATTCACAATCCCCTGAAGCTTTCTTT 516
|| || |||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 595 CCGTACGGAGCAGTTGGTCACGGTGGACATTACCACTCGCAGTCCCCTGAAGCTTTCTTT 654
Query 517 TGCCATGTTCCTGGTATTAAGGTTGTTATCCCTCGAAGTCCACGAGAAGCAAAGGGACTG 576
|| ||||| |||||||| || |||||||| |||||||||||||| ||||| |||||| |
Sbjct 655 TGTCATGTCCCTGGTATCAAAGTTGTTATTCCTCGAAGTCCACGGGAAGCTAAGGGATTA 714
Query 577 TTGTTGTCATGTATCCGTGATCCAAATCCCGTTGTCTTCTTCGAACCAAAGTGGCTGTAT 636
|| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 715 TTATTGTCATCCATCCGTGATCCGAATCCCGTTGTCTTTTTCGAACCAAAGTGGCTATAT 774
Query 637 CGTCAAGCAGTAGAAGAAGTCCCTGA-GCATGACTATATGATACCTTTATCAGAAGCCGA 695
|||||||| ||||| || |||||||| | |||||||||||||||||||||| || || ||
Sbjct 775 CGTCAAGCGGTAGAGGATGTCCCTGAAG-ATGACTATATGATACCTTTATCTGAGGCAGA 833
Query 696 GGTTATAAGAGAAGGCAATGACATAACCCTTGTTGGATGGGGAGCTCAGCTTACCATTAT 755
|||||| ||||||| |||||||| ||||||||||||||||| ||||| || || ||
Sbjct 834 GGTTATGCGAGAAGGTTCCGACATAACTCTTGTTGGATGGGGAGCACAGCTCACTATCAT 893
Query 756 GGAACAAGCTTGTCTGGACGCAGAAAAGGAAGGAATATCATGTGAACTGATAGATCTCAA 815
||||||||| ||||| ||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 894 GGAACAAGCATGTCTTGACGCAGAAAACGAAGGAATATCGTGTGAATTGATAGATCTCAA 953
Query 816 GACTTTGCTTCCTTGGGATAAAGAAACCGTCGAGGCCTCGGTTaaaaaaaCTGGAAGACT 875
|||| || | ||||||||||| |||| ||| ||| |||| || | ||| ||||| |||||
Sbjct 954 GACTCTGATCCCTTGGGATAAGGAAATCGTTGAGACCTCAGTGAGAAAGACTGGCAGACT 1013
Query 876 TCTTATAAGCCATGAAGCTCCTGTAACAGGAGGTTTTGGAGCAGAGATCTCTGCAACAAT 935
|||||| ||||||||||||||||| |||||||| ||||| || |||||| ||||||| ||
Sbjct 1014 TCTTATTAGCCATGAAGCTCCTGTTACAGGAGGCTTTGGGGCCGAGATCGCTGCAACTAT 1073
Query 936 CCTCGAACGTTGCTTTTTAAAGTTAGAAGCTCCAGTAAGCAGAGTTTGTGGACTGGATAC 995
| || |||||||| || | ||||||||| || ||||||||||||||||| ||||| ||
Sbjct 1074 AGTTGAGCGTTGCTTCTTGAGGTTAGAAGCACCTGTAAGCAGAGTTTGTGGCCTGGACAC 1133
Query 996 TCCATTTCC-TCTTGTGTTTGAGCCATTCTACATGCCCACCAGGAACAAGATATTGGACG 1054
||| ||||| ||| ||||| || || ||||||||||| |||| ||||||||||||||| |
Sbjct 1134 TCC-TTTCCCTCTAGTGTTCGAACCTTTCTACATGCCAACCAAGAACAAGATATTGGATG 1192
Query 1055 CGATCAAATCGACTGTGAATTACTAGCC 1082
| |||| ||| |||||||||||||||||
Sbjct 1193 CAATCAGATCCACTGTGAATTACTAGCC 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5