BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924070
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55570.1 | Symbols: sks12 | SKU5 similar 12 | chr1:20757767... 2848 0.0
AT3G13390.1 | Symbols: sks11 | SKU5 similar 11 | chr3:4351045-... 1511 0.0
> AT1G55570.1 | Symbols: sks12 | SKU5 similar 12 | chr1:20757767-20760076
FORWARD LENGTH=2088
Length=2088
Score = 2848 bits (1542), Expect = 0.0
Identities = 1655/1711 (97%), Gaps = 2/1711 (0%)
Strand=Plus/Plus
Query 1 TAATAATAAAGTTTACTATTAATGAAGGGAGGGGTTAAACTTTTGGCCGTGTGCCTTTGT 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 TAATAATAAAGTTTACTATTAATGAAGGGAGGGGTTAAACTTTTGGCCGTGTGCCTTTGC 154
Query 61 GTGGCCACGGCGACCGTCATGATGGTCCAAGCGGAGGACCCTTACTTCCACCACGTGTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GTGGCCACGGCGACCGTCATGATGGTCCAAGCGGAGGACCCTTACTTCCACCACGTGTGG 214
Query 121 AATGTGACGTACGGAACCGCATCTCCTCTAGGCGTTCCACAACAAGTCATTCTCATTAAC 180
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 215 AACGTGACGTACGGAACCGCATCTCCTCTCGGCGTTCCACAACAAGTCATCCTCATCAAC 274
Query 181 GGTCAATTCCCTGGTCCTAACATCAACTCCACTTCTAACAACAACGTCATCGTTAATGTT 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 275 GGTCAATTCCCTGGTCCTAACATCAACTCGACTTCTAACAACAACGTCATCGTTAATGTC 334
Query 241 TTCAACAACCTCGACGAGCCTTTCCTCATTACCTGGAATGGAATCCAGCACAGAAAGAAC 300
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 335 TTCAACAACCTCGACGAGCCTTTCCTCATCACCTGGGCCGGAATCCAGCACAGGAAGAAC 394
Query 301 TGCTGGCAAGATGGAACAGCTGGAACAATGTGTCCCATCCCTCCGGGTCAGAACTTCACA 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 395 TGCTGGCAAGATGGAACAGCTGGAACAATGTGTCCGATCCCTCCGGGTCAGAACTTTACA 454
Query 361 TACCATTTCCAGCCAAAGGATCAAATCGGTAGCTACTTCTACTACCCGACCACAGCCATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TACCATTTCCAGCCAAAGGATCAAATCGGTAGCTACTTCTACTACCCGACCACAGCCATG 514
Query 421 CATCGTGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTCTTGATCCCGGTT 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 515 CATCGTGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTATTGATCCCGGTT 574
Query 481 CCGTACGCTGACCCTGAAGATGACTACACTGTCCTTATCAACGACTGGTACACCAAAAGC 540
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 575 CCTTACGCTGACCCTGAAGATGACTACACTATCCTTATCAACGACTGGTACACCAAAAGC 634
Query 541 CACACTCAGCTCAAGAAGTTTCTCGACAGTGGTCGCACTATTGGCCGTCCAGATGGCATT 600
|| ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 635 CATACTCAGCTCAAGAAGTTCCTCGACAGTGGTCGTACTATTGGTCGTCCTGATGGCATT 694
Query 601 CTCATCAACGGTAAATCCGGGAAAACTGATGGCTCTGACAAACCTCTTTTCACCTTGAAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 695 CTCATCAACGGTAAATCCGGGAAAACTGATGGCTCTGACAAACCTCTTTTCACTTTGAAG 754
Query 661 CCAGGAAAAACCTACAGAGTCCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTC 720
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 755 CCAGGGAAAACATACAGAGTTCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTC 814
Query 721 AGAATTCAGAACCACAAAATGAAGCTTGTCGAGATGGAAGGTTCACACGTTCTACAAAAC 780
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 815 AGGATTCAGAACCACAAAATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAAC 874
Query 781 GACTATGACTCCCTTGATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGAC 840
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GACTATGACTCGCTTGATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGAC 934
Query 841 CAAGAACTTAAAGATTACTACATGGTTGCTTCCACAAGGTTCTTGAAGAAACCTTTGACA 900
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 935 CAAGAACCTAAAGATTACTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGACA 994
Query 901 ACGACAGGGTTACTCCGCTACGAGGGAGGCAAAGGTCCTGCCTCTTCTCAGCTACCTGCC 960
|| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 995 ACCACAGGATTGCTCCGCTACGAGGGAGGCAAAGGTCCTGCGTCTTCTCAGCTACCTGCG 1054
Query 961 GCCCCCGTTGGTTGGGCTTGGTCTTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACA 1020
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1055 GCCCCCGTTGGTTGGGCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACA 1114
Query 1021 GCCAGCGCAGCTAGACCTAACCCACAAGGCTCGTACCACTACGGTAAAATTAACATCACT 1080
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1115 GCCAGCGCCGCTAGACCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACT 1174
Query 1081 CGCACCATCAAGCTCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 CGCACCATCAAGCTCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTG 1234
Query 1141 AGCGGGGTCTCCCACACCGACCCTGAGACACCTCTCAAGCTCGCTGAGTACTTCGGCGTT 1200
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1235 AGCGGGGTCTCCCACACCGACCCTGAGACACCTCTCAAGCTTGCTGAGTACTTCGGCGTT 1294
Query 1201 GCTGATAAGGTTTTCAAGTACGACACCATCTCGGACAACCCAAATCCCGATCAGATCAAG 1260
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1295 GCTGATAAGGTTTTCAAGTACGACACCATCTCGGACAACCCAAATCCTGATCAGATCAAG 1354
Query 1261 AACATCAAGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 AACATCAAGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1414
Query 1321 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1474
Query 1381 GTAGCGGTTGAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGAC 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 GTAGCGGTTGAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGAT 1534
Query 1441 GCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 GCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACA 1594
Query 1501 TTCGACAACTGTGGAATGTGGAACATTAGGTCGGAGAACTCAGAGAGACGTTACTTGGGA 1560
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 1595 TTCGACAACTGTGGAATGTGGAACATTAGGTCGGAGAACGCAGAAAGACGCTACTTGGGA 1654
Query 1561 CAGCAACTGTACGCAAGCGTCTTGTCACCGGAAAAATCTCTCCGGGACGAATACAACATG 1620
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1655 CAGCAACTGTACGCAAGCGTCTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACATG 1714
Query 1621 CCGGAGACAAGCCTCCAATGTGGTCTCGTCAAGGGCAAGCCTAAGGTTAACCCTTATGCC 1680
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1715 CCGGAGACAAGCCTTCAATGTGGTCTTGTCAAGGGCAAGCCTAAGGTTAACCCTTATGCC 1774
Query 1681 GGAGCTTAATAT--TTTCTTTGAGATTATTT 1709
|||||||||| | ||||||||| |||||||
Sbjct 1775 GGAGCTTAATTTGCTTTCTTTGAAATTATTT 1805
> AT3G13390.1 | Symbols: sks11 | SKU5 similar 11 | chr3:4351045-4353393
REVERSE LENGTH=2125
Length=2125
Score = 1511 bits (818), Expect = 0.0
Identities = 1398/1679 (83%), Gaps = 36/1679 (2%)
Strand=Plus/Plus
Query 29 GAGGGGTTAAACTTTTGGCCGTGTGCCTTTGTGTGGCCAC-GGCG-ACCGTCATGATGGT 86
||||||||||||| ||||||| |||||| | ||||| | | || | || || | ||
Sbjct 109 GAGGGGTTAAACTCTTGGCCGCGTGCCTCTACCTGGCCGCTGCCGCAACG--GTGGTAGT 166
Query 87 CCAAGCGGAGGACCCTTACTTCCACCACGTGTGGAATGTGACGTACGGAACCGCATCTCC 146
|| ||| || || ||||||||||| ||||| ||||| ||||| |||||||||| |||||
Sbjct 167 CCGAGCCGAAGATCCTTACTTCCATCACGTATGGAACGTGACCTACGGAACCGTGTCTCC 226
Query 147 TCTAGGCGTTCCACAACAAGTCATTCTCATTAACGGTCAATTCCCTGGTCCTAACATCAA 206
||| || ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 227 TCTCGGTGTTCCACAACAAGTCATTCTCATCAACGGACAATTCCCTGGTCCCAACGTCAA 286
Query 207 CTCCACTTCTAACAACAACGTCATCGTTAATGTTTTCAACAACCTCGACGAGCCTTTCCT 266
||| || || ||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 287 CTCAACCTCCAACAACAACGTCATCATTAATGTCTTCAACAACCTCGACGAACCTTTCCT 346
Query 267 CATTACCTGGAATGGAATCCAGCACAGAAAGAACTGCTGGCAAGATGGAACAGCTGGAAC 326
| | || |||||||| ||||| ||||| |||||||| ||||||||||| || | |||||
Sbjct 347 CCTCACATGGAATGGGATCCAACACAGGAAGAACTGTTGGCAAGATGGGACTCCAGGAAC 406
Query 327 AATGTGTCCCATCCCT-CCGGGTCA-GAACTTCACATACCATTTCCAGCCAAAGGATCAA 384
|||||||| || | | || || || |||| ||| |||||||||||||| ||||||||
Sbjct 407 TATGTGTCCGAT-CATGCCCGG-CACCAACTACACTTACCATTTCCAGCCTAAGGATCAG 464
Query 385 ATCGGTAGCTACTTCTACTACCCGACCACAGCCATGCATCGTGCCGCTGGTGGCTTTGGT 444
||||| ||||| ||||||||||| | ||| || ||||| ||| |||||||||| || |||
Sbjct 465 ATCGGAAGCTATTTCTACTACCCCAGCACCGCGATGCACCGTTCCGCTGGTGGATTCGGT 524
Query 445 GGCCTTCGTGTGAACAGCCGTCTCTTGATCCCGGTTCCGTACGCTGACCCTGAAGATGAC 504
|| || |||||||||||||||||| | |||||||| || || |||||||| |||||||||
Sbjct 525 GGTCTCCGTGTGAACAGCCGTCTCCTCATCCCGGTCCCTTATGCTGACCCAGAAGATGAC 584
Query 505 TACACTGTCCTT-ATCAACGACTGGTACACCAAAAGCCACACTCAGCTCAAGAAGTTTCT 563
||||| || ||| ||| |||||||||||||| |||||||| ||| | ||||| || ||
Sbjct 585 TACACCGT-CTTGATCGGTGACTGGTACACCAAGAGCCACACCCAGTTGAAGAAATTCCT 643
Query 564 CGACAGTGGTCGCACTATTGGCCGTCCAGATGGCATTCTCATCAACGGTAAA-TCCGGGA 622
||||| ||||| ||| |||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 644 TGACAGCGGTCGTACTCTTGGCCGTCCAGATGGTATTCTCATCAACGG-AAAGTCCGGGA 702
Query 623 AA-ACTGATGGCTCTGACAAACCTCT-TTTCACCTTGAAGCCAGGAAAAACCTACAGAGT 680
|| | ||||| || || |||||| ||| |||||||| || ||||| |||||||| ||
Sbjct 703 AAGGC-GATGGATCCGATGCACCTCTCTTT-ACCTTGAAACCTGGAAAGACCTACAGGGT 760
Query 681 CCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTCAGAATTCAGAACCACAAAAT 740
| ||||||||||||||||||||| ||||||||||||| || |||||||| ||||| |
Sbjct 761 TAGGATCTGTAACGTGGGTCTCAAGACATCTCTTAACTTTAGGATTCAGAATCACAAGTT 820
Query 741 GAAGCTTGTCGAGATGGAAGGTTCACACGTTCTACAAAACGACTATGACTCCCTTGATGT 800
||||||||| ||||||||||| || |||||||| || ||||| |||||||| || || ||
Sbjct 821 GAAGCTTGTTGAGATGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGACGT 880
Query 801 CCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGC-AGACCAAGAA-CTTAAAGATTAC 858
|| || |||||||||| || ||| | || || | | || ||| | ||||||||||
Sbjct 881 TCACGTTGGTCAGTGTTACGGAACCATCCTTACCGCTA-ATCAGGAAGC-TAAAGATTAC 938
Query 859 TACATGGTTGCTTCCACAAGGTTCTTGAAGAAAC-CTT-TGACAACGACAGGGT-TACTC 915
||||||||||| ||| | |||||||||||| | || | || || || ||| | |||
Sbjct 939 TACATGGTTGCATCCTCTAGGTTCTTGAAG--TCGGTTATAACCACCAC-TGGTCTTCTC 995
Query 916 CGCTACGAGGGAGGCAAAGGTCCTGCCTCTTCTCAGCTACCTGCC-GCCCCCGTTGGTTG 974
||||| ||||||||||||||||| || ||||| |||||||| || | || || || ||
Sbjct 996 CGCTATGAGGGAGGCAAAGGTCCCGCTTCTTCGCAGCTACC-CCCTGGTCCAGTCGGCTG 1054
Query 975 GGCTTGGTCTTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACAGCCAGCGCAGCTAG 1034
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1055 GGCTTGGTCCTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACCGCCAGTGCAGCCAG 1114
Query 1035 ACCTAACCCACAAGGCTCGTACCACTACGGTAAA-ATTAACATCACTCGCACCATCAAGC 1093
|||||||| || || || ||||||||||| ||| || |||||||| |||||||||||||
Sbjct 1115 GCCTAACCCTCAGGGATCTTACCACTACGG-AAAGATCAACATCACACGCACCATCAAGC 1173
Query 1094 TCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTGAGCGGGGTCTCCC 1153
| ||||||||||| || ||||||||||| ||||| |||||||| |||| ||| ||||| |
Sbjct 1174 TTGTGAACACTCAAGGCAAGGTCGATGGAAAGCTCAGGTACGCTTTGAACGGAGTCTCGC 1233
Query 1154 ACACCGACCCTGAGACACC-TCTCAAGCTCGCTGAGTACTTCGGCGTTGCTGATAAGGTT 1212
|||| ||||| || || || | | ||||| || |||||||| || ||||| || ||||||
Sbjct 1234 ACACTGACCCCGAAACCCCAT-TGAAGCTTGCGGAGTACTTTGGTGTTGCCGACAAGGTT 1292
Query 1213 TTCAAGTACGACACCATCTCGGACAACCCAAATCCC-GATCAGATCAAGAACATCAAGAT 1271
|||||||||||| ||||| | || ||||| || ||| || || ||||||| |||||||||
Sbjct 1293 TTCAAGTACGACTCCATCACTGATAACCC-AACCCCAGAACAAATCAAGAGCATCAAGAT 1351
Query 1272 CGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTGTTCGAGAACCA 1331
|| || |||||||||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct 1352 CGTGCCAAATGTTCTTAACATCACTCACCGCACCTTCATCGAGGTGGTGTTTGAGAACCA 1411
Query 1332 CGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCTGTAGCGGTTGA 1391
||||| |||||| ||||| ||||| |||||||| || |||||||| || || || || ||
Sbjct 1412 CGAGAAGAGTGTTCAGTCGTGGCACTTGGACGGTTACTCCTTCTTTGCCGTCGCTGTCGA 1471
Query 1392 GCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGACGCAGTGAGCCG 1451
||||||||| ||||| ||||||||||| || ||||||||||| || |||||||||||| |
Sbjct 1472 GCCAGGGACTTGGACCCCAGAGAAGAGAAAAAACTACAACCTGCTGGACGCAGTGAGCAG 1531
Query 1452 ACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACATTCGACAACTG 1511
|||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1532 ACACACAGTCCAAGTCTACCCAAAATGTTGGGCAGCAATCTTGCTCACATTCGACAACTG 1591
Query 1512 TGGAATGTGGAACATTAGGTCGGAGAACTCAGAGAGACGTTACTTGGGACAGCAACTGTA 1571
||||||||||||| || | || || ||||| |||||||| ||||| |||||||| || ||
Sbjct 1592 TGGAATGTGGAACGTTCGATCTGAAAACTCCGAGAGACGCTACTTAGGACAGCAGCTTTA 1651
Query 1572 CGCAAGCGTCTTGTCACCGGAAAAATCTCTCCGGGACGAATACAACATGCCGGAGACAAG 1631
||| || ||||||||||| || ||||| || | || |||||||||||||| ||||||||
Sbjct 1652 CGCGAGTGTCTTGTCACCAGAGAAATCACTGAGAGATGAATACAACATGCCTGAGACAAG 1711
Query 1632 CCTCCAATGTGGTCTCGTCAAGGGCA-AGCCTAAGGTTAACCCTTATGCCGGAGCTTAA 1689
||||||||||||||| || ||||| | | |||||| ||||||||| || ||||| |||
Sbjct 1712 CCTCCAATGTGGTCTAGTGAAGGGTACA-CCTAAGCCTAACCCTTACGCTGGAGCCTAA 1769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5