BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924071
Length=1381
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55580.1 | Symbols: LAS, SCL18 | GRAS family transcription f... 2183 0.0
> AT1G55580.1 | Symbols: LAS, SCL18 | GRAS family transcription
factor | chr1:20764011-20765752 FORWARD LENGTH=1742
Length=1742
Score = 2183 bits (1182), Expect = 0.0
Identities = 1318/1384 (95%), Gaps = 7/1384 (1%)
Strand=Plus/Plus
Query 1 ATCTTTTTCTATCTTTTCAAATGCTTACTTCCTTCAAATCCTCTAGCTCCTCCTCCGAAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 ATCTTTTTCTATCTTTTCAAATGCTTACTTCCTTCAAATCCTCTAGCTCCTCCTCCGAAG 135
Query 61 ATGCCACCGCCACCACCACCGATAATCCTCCTCCtttttttC-TGGCCTCCTCTTCCGCC 119
|||||||||| ||||||||||| ||||||||||| ||| | | | |||||||| || |||
Sbjct 136 ATGCCACCGCTACCACCACCGAGAATCCTCCTCC-TTTGTGCATCGCCTCCTCCTCGGCC 194
Query 120 GCAACCTCCGCCTCCCATCACCTCCGTCGTCTCCTTTTCACCGCTGCGAATTTCGTCTCC 179
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 195 GCAACCTCCGCCTCACATCACCTCCGTCGTCTTCTTTTCACCGCTGCGAATTTCGTCTCC 254
Query 180 CAGTCAAACTTCACCGCCGCTCAAAACTTACTCTCGATCCTGTCCCTTAACTCTTCTCCT 239
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 255 CAGTCAAACTTCACCGCCGCTCAAAACTTACTCTCAATCCTCTCCCTTAACTCTTCTCCT 314
Query 240 CACGGTGACTCCACCGAGCGACTTGTCCACCTCTTCACAAAAGCCTTGTCCGTACGGATC 299
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 315 CACGGCGACTCCACCGAGCGACTTGTACACCTCTTCACTAAAGCCTTGTCCGTACGAATC 374
Query 300 AACCGTCAACAACAAGATCCGACGGCTGAAACGGTGGCCACGTGGACGACGAACGAAATG 359
|||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 375 AACCGTCAGCAACAAGATCAGACGGCTGAAACGGTTGCCACGTGGACGACGAACGAAATG 434
Query 360 ACGATGAGTAACTCCACGGTGTTCACGAGCAGTGTATGCAAAGAACAGTTCTTATTTCGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 435 ACGATGAGTAACTCCACGGTGTTCACGAGCAGTGTATGCAAAGAACAGTTCTTGTTTCGA 494
Query 420 ACCAAGAACAACAATTCTGATTTCGAATCTTGTTACTATCTTTGGCTGAATCAACTAACG 479
|||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct 495 ACCAAGAACAACAATTCTGACTTCGAGTCTTGTTACTATCTTTGGCTAAACCAACTAACG 554
Query 480 CCGTTTATTCGGTTCGGTCATTTAACGGCGAACCAAGCGATCCTTGACGCGACGGAGACA 539
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 555 CCGTTTATTCGGTTCGGTCATTTAACGGCGAACCAAGCTATCCTCGACGCGACGGAGACA 614
Query 540 AACGATAACGGAGCTCTACATATACTTGATTTAGATATATCACAAGGACTTCAATGGCCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AACGATAACGGAGCTCTACATATACTTGATTTAGATATATCACAAGGACTTCAATGGCCT 674
Query 600 CCATTGATGCAAGCCCTAGCAGAGAGGTCATCAAACCCTAACAGTCCACCTCCATCTCTC 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 675 CCATTGATGCAAGCCCTAGCAGAGAGGTCATCAAACCCTAGCAGTCCACCTCCATCTCTC 734
Query 660 CGCATAACCGGATGCGGTCGAGACGTAACCGGATTAAACCGAACCGGAGACAGGTTAACC 719
||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 735 CGCATAACCGGATGCGGTCGAGATGTAACCGGATTAAACCGAACTGGAGACCGGTTAACC 794
Query 720 CGGTTCGCTGACTCTTTAGGTCTCCAATTTCAGTTTCACACGCTAGTGATCGTAGAAGAA 779
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 795 CGGTTCGCTGACTCTTTAGGTCTCCAATTCCAGTTTCACACGCTAGTGATCGTAGAAGAA 854
Query 780 GAAGATCTCGCCGGACTTTTGTTACAGATCCGATTGTTAGCTCTCTCTGCCGTGCAAGGA 839
|| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 855 GA---TCTCGCCGGACTTTTGCTACAGATCCGATTGTTAGCTCTCTCAGCCGTACAAGGA 911
Query 840 GAGACCATTGCCGTCAATTGTGTTCACTTCCTCCACAAAATCTTTAACGACGATGGAGAT 899
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 912 GAGACCATTGCCGTCAATTGTGTTCACTTCCTCCACAAAATATTTAACGACGATGGAGAT 971
Query 900 ATGATAGGTCACTTTTTGTCAGCGATCAAGAGCTTAAACCCTAGAATCGTGACAATGGCG 959
||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 972 ATGATCGGTCACTTCTTGTCAGCGATCAAGAGCTTAAACTCTAGAATCGTTACAATGGCA 1031
Query 960 GAGAGAGAAGCGAATCACGGAGATCATTCGTTCTTGAATAGATTCTCCGAGGCAGTGGAT 1019
||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1032 GAGAGAGAAGCTAATCATGGAGATCACTCGTTCTTGAATAGATTCTCTGAGGCAGTGGAT 1091
Query 1020 CATTACATGGCGATATTTGATTCGTTGGAAGCGACGTTGCCGCCAAATAGCCGAGAGAGA 1079
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 CATTACATGGCGATCTTTGATTCGTTGGAAGCGACGTTGCCGCCAAATAGCCGAGAGAGA 1151
Query 1080 TTAACCCTAGAGCAACGGTGGTTTGGTATGGAGATTTTGGATGTTGTGGCAGCAGAAGCG 1139
|||||||||||||||||||||| |||| ||||||||||||||||||||| || |||| |
Sbjct 1152 CTAACCCTAGAGCAACGGTGGTTCGGTAAGGAGATTTTGGATGTTGTGGCGGCGGAAGAG 1211
Query 1140 ACGGAGAGAAAGCAAAGACATCGGAGGTTTGAGATTTGGGAAGAGATGATGAAGAGATTT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1212 ACGGAGAGAAAGCAAAGACATCGGAGGTTTGAGATTTGGGAAGAGATGATGAAGAGGTTT 1271
Query 1200 GGTTTCGTTAACGTTCCTATTGGAAGCTTTGCTTTGTCTCAAGCTAAGCTTCTTCTTAGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GGTTTCGTTAACGTTCCTATTGGAAGCTTTGCTTTGTCTCAAGCTAAGCTTCTTCTTAGA 1331
Query 1260 CTCCATTATCCTTCAGAAGGATATAATCTTCAGTTCCTTAACAATTCTTTGTTTCTTGGC 1319
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1332 CTTCATTATCCTTCAGAAGGTTATAATCTTCAGTTCCTTAACAATTCTTTGTTTCTTGGC 1391
Query 1320 TGGCAAAATCGTCTCCTCTTTTCTGTTTCATCGTGGAAATGATCCAAAGAGGAG-a-aaa 1377
||||||||||||| |||||| || ||||| ||||||||||||||||||||| || | |||
Sbjct 1392 TGGCAAAATCGTCCCCTCTTCTCCGTTTCGTCGTGGAAATGATCCAAAGAGAAGGACAAA 1451
Query 1378 aaaa 1381
||||
Sbjct 1452 AAAA 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68021738475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5