BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924077 Length=1477 Score E Sequences producing significant alignments: (Bits) Value AT1G55630.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2279 0.0 AT3G60050.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 922 0.0 > AT1G55630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:20791675-20793564 REVERSE LENGTH=1890 Length=1890 Score = 2279 bits (1234), Expect = 0.0 Identities = 1388/1464 (95%), Gaps = 3/1464 (0%) Strand=Plus/Plus Query 1 ATTTTGGATTAAACTCAAATATGAACTCTTTAGTTCATTATAGCACAAGTGTTGTAGTTC 60 |||||||||||| |||||||||||||||| || ||||||||||||| ||||||| |||| Sbjct 295 ATTTTGGATTAAGCTCAAATATGAACTCTGTAATTCATTATAGCACTAGTGTTGCGGTTC 354 Query 61 GTAAAGCTTCTCGCTTTCTCTTCACATCGAGGAGATTTTGCAATGGTAGCATCGGTGGTG 120 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 355 GTAAAGCTTCTCGCTTTCTCTTCACATCGAGGAAATTTTGCAATGGTAGCATCGGTGGTG 414 Query 121 ATGTAACCGATAATGGGACCGAAGAGCCCTTGAAGATTTCCTGGGAATCTTCTGAGATGG 180 ||||||||||||| ||||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 415 ATGTAACCGATAACGGGACCGAAGAGCCCTTGAAGATAACTTGGGAATCTTCGGAGATGG 474 Query 181 ATTGTGGGTTTGACGAGGAGGAACATGGTGAGAAAATCTCTGTTAGAAGAAGGTTTATGG 240 |||||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||| Sbjct 475 ATTGTGAGTTTGACCAGGAGGAAAATGGTGAGAAAATCTCTGTTAGAAAAAGGTTTATGG 534 Query 241 AGAGTGCTAAGCTCGGTGCGTCTCGGGTTCTCGATACTTTACAGCAAGATTGTCCCGGTT 300 ||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 535 AGAGTACTAAACTCAGTGCGTCTCGGGTTCTCGATACGTTACAGCAAGATTGTCCCGGTT 594 Query 301 TCAATACGAAATCAGCTTTAGATGATTTGAACGTTACAATCTCAGGGCTATTAGTGAGAG 360 ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| Sbjct 595 TCAATACGAAATCAGCTTTAGATGAATTGAATGTTTCAATCTCAGGGCTATTAGTGAGAG 654 Query 361 AGGTTCTTGTTGGGATCTTAAGGACACTGAGCTATGATAATAAGACAAGGTGTGCTAAGC 420 |||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||||| Sbjct 655 AGGTTCTTGTTGGGATCTTAAGAACTCTGAGCTTTGATAATAAAACAAGGTGTGCTAAGC 714 Query 421 TAGCTTACAAGTTCTTTGTGTGGTGTGGTGGACAAGAGAATTTCAGGCACACTGCGAATT 480 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 TCGCTTACAAGTTCTTTGTGTGGTGTGGTGGACAAGAGAATTTCAGGCACACTGCGAATT 774 Query 481 GTTATCATTTACTTATGAAGATATTTGCAGAGTGTGGTGAGTATAAAGCCATGTGCAGGC 540 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 775 GTTATCATTTACTTATGAAGATATTTGCTGAATGTGGTGAGTATAAAGCCATGTGCAGGC 834 Query 541 TAATTGACGAGATGATCAAAGACGGTTATCCAACGACGGCATGCACGTTTAATCTGTTGA 600 ||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||| Sbjct 835 TAATTGATGAGATGATCAAAGACGGTTATCCAACAACAGCATGCACGTTTAATCTATTGA 894 Query 601 TATGTACTTGCGGTGAAGCAGGCCTTGCTAGAGATGTCGTGGAGCAATTCATCAAGTCGA 660 ||||||||||||| ||||||||||||||||||||||| || ||||| ||||||||||||| Sbjct 895 TATGTACTTGCGGGGAAGCAGGCCTTGCTAGAGATGTTGTTGAGCAGTTCATCAAGTCGA 954 Query 661 AAACTTTCAATTACCGACCTTACAAACACTCTTATAACGCCATTTTGCATTCTTTGCTAG 720 |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| Sbjct 955 AAACTTTCAATTACCGACCTTATAAACACTCTTACAATGCCATTTTGCATTCTTTGCTAG 1014 Query 721 GGGTGAAACAGTACAAGCTGATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTT 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GGGTGAAACAGTACAAGCTGATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTA 1074 Query 781 CGCCGGATGTTCTGACTTACAACATTGTAATGTTTGCAAACTTTAGGTTAGGGAAAACAG 840 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 CGCCAGATGTTCTGACTTACAACATTGTAATGTTTGCAAACTTTAGGTTAGGGAAAACAG 1134 Query 841 ATCGGCTTTACAGATTACTCGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTATATA 900 |||||||||| ||||| || ||||||||||||||||||||||||||||||||||| |||| Sbjct 1135 ATCGGCTTTATAGATTGCTAGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTGTATA 1194 Query 901 CATACAACATCCTCCTCCACCATCTAGCAACAGGAAACAAGCCTCTCGCTGCTCTTAACC 960 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1195 CATACAACATCCTCCTCCATCATCTAGCAACAGGAAACAAGCCTCTCGCTGCTCTTAACC 1254 Query 961 TACT-AACTCATATGAGGGAAGTTGGAGTAGAGCCCGGTGTGATCCATTTCACTACTCTG 1019 | || || ||||||||||||||| ||||| ||||||||||| |||||||||||||||||| Sbjct 1255 TTCTGAA-TCATATGAGGGAAGTAGGAGTTGAGCCCGGTGTCATCCATTTCACTACTCTG 1313 Query 1020 ATAGACGGGCTGAGCCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAATG 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1314 ATAGACGGGCTGAGCCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAACG 1373 Query 1080 GTGAAAGTTGGATGCAAGCCGGATGTTGTTTGCTACACTGTTATGATCACAGGTTATATA 1139 |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1374 GTGAAAGTTGGATGCACGCCAGATGTTGTTTGCTACACTGTTATGATCACAGGATATATA 1433 Query 1140 TCAGGTGGGGAGCTCGAGAAAGCTGAAGAAATGTTTAAAGAGATGACAGAAAAGGGTCAA 1199 ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||| Sbjct 1434 TCAGGTGGGGAGCTCGAGAAAGCCGAAGAAATGTTCAAAGAAATGACAGAAAAGGGGCAA 1493 Query 1200 CTCCCTAATGTTTTCACATACAACTCGATGATCCGCGGGTTTTGTATGGCGGGGAAATTC 1259 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1494 CTCCCGAATGTTTTCACATACAATTCGATGATCCGCGGGTTTTGTATGGCGGGGAAATTC 1553 Query 1260 AAAGAGGCGTGCTCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTCGTG 1319 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1554 AAAGAGGCGTGCGCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTTGTA 1613 Query 1320 GTGTATAGTATACTGGTGAACAATCTAAGAAACGCAGGGAAGGTTTTAGAGGCTCACGAG 1379 |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| || Sbjct 1614 GTGTATAGTACACTGGTGAACAATCTAAAAAACGCGGGGAAGGTTTTAGAGGCTCATGAA 1673 Query 1380 GTAGTAAAAGACATGGTGGAGAAAGGGCATTATGTTCATCTTATTTCAAAGTTGAAAAAA 1439 ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1674 GTAGTGAAGGACATGGTAGAGAAAGGGCATTATGTTCATCTTATTTCAAAGTTGAAAAAA 1733 Query 1440 TATAGAAGATCTTAGTTTTTGTTT 1463 |||||||||||||||||||| ||| Sbjct 1734 TATAGAAGATCTTAGTTTTT-TTT 1756 > AT3G60050.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:22180025-22181776 REVERSE LENGTH=1680 Length=1680 Score = 922 bits (499), Expect = 0.0 Identities = 1018/1263 (81%), Gaps = 58/1263 (5%) Strand=Plus/Plus Query 216 ATCTCTGTTAGAAGAAGGTTTATGGAGAGTGCTAAGC-TCGGTGCGTCTCGGGTTCTCGA 274 ||||||||| | || |||||| |||||||||| || | | |||||||||| ||||||| Sbjct 239 ATCTCTGTTCGGAGTAGGTTTTTGGAGAGTGCCAATCAT-AGTGCGTCTCGTGTTCTCG- 296 Query 275 T-ACTTTACAGCAAGATTG--TCCCGGTTTCAATACGAAA-TCAGCTTTAGATGATTTGA 330 | || || |||| ||| || | | || |||||| | ||| |||| ||||||||| |||| Sbjct 297 TGACATTGCAGCTAGA-TGAAT-CTGGATTCAATTC-AAAGTCAGTTTTAGATGAATTGA 353 Query 331 ACGTTACAATCTCAGGGCTAT-TAGTGAGAGAGGTTCTTGTTGGGATCTTAAGGACAC-T 388 | |||| | |||||||||| | ||||||| ||||||||||| ||||||||||||| || | Sbjct 354 ATGTTAGAGTCTCAGGGCT-TCTAGTGAGGGAGGTTCTTGTAGGGATCTTAAGGA-ACTT 411 Query 389 GAGCTATGATAATAAGACAAGGTGTGCTAAGCTAGCTTACAAG-TTCTTTGTGTGGTGTG 447 |||||||||||||||| |||| ||||| || |||||||| || ||||| |||||| || Sbjct 412 GAGCTATGATAATAAGGCAAGATGTGCGAAACTAGCTTA-TAGATTCTTCCTGTGGTCTG 470 Query 448 GTGGACAAGAGAATTTCAGGCACACTGCGAATTGTTATCATTTACTTATGAAGATATTTG 507 | | ||||||| ||| |||||||| | ||||| ||||||||| |||||||||||||||| Sbjct 471 GAGAACAAGAGTGTTTTAGGCACACAGTGAATTCTTATCATTTGCTTATGAAGATATTTG 530 Query 508 CAGAGTGTGGTGAGTATAAAGCCATGTGCAGGCTAATTGACGAGAT-GATCAAAGACGG- 565 |||||||||| ||||| || || ||||| ||| || |||| ||||| | || ||||||| Sbjct 531 CAGAGTGTGGAGAGTACAAGGCAATGTGGAGGTTAGTTGATGAGATGGTTC-AAGACGGA 589 Query 566 TTATCCAACGACGGC-ATGCACGTTTAATCTGTTGATATGTACTTGCGGTGAAGCAGGCC 624 || || || || || | | ||||||||||||||||| |||| ||| ||||||||||| Sbjct 590 TT-CCCGACAACAGCGA-GGACGTTTAATCTGTTGATTTGTAGTTGTGGTGAAGCAGG-T 646 Query 625 TT-GCTAGAGATGTC-GTGGAGCAATTCATCAAGTCGAAAACTTTCAATTACCGACCTTA 682 || || | | | | | || | ||| ||||| ||||| || ||||| ||||||||||||| Sbjct 647 TTAGCGAAACAAG-CTGTTGTGCAGTTCATGAAGTCCAAGACTTTTAATTACCGACCTTT 705 Query 683 CAAACACTCTTATAACGCCATTTTGCATTCTTTGCTAGGGGTGAAACAGTACAAGCTGAT 742 |||||||||||||||||| |||||| ||||||||||||| || |||||||| || |||| Sbjct 706 CAAACACTCTTATAACGCGATTTTGAATTCTTTGCTAGGTGTAAAACAGTATAAATTGAT 765 Query 743 TGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTTCGCCGGATGTTCTGACTTACAA 802 ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| || Sbjct 766 TGAGTGGGTTTACAAGCAGATGTTAGAAGACGGGTTTTCGCCAGATGTTCTGACTTATAA 825 Query 803 CATTGTAATGTTTG-CAAACTTTAGGTTAGGGAAAACAGATCGGCTTT-ACAGATTACTC 860 |||| | ||| | |||||| |||||||||||||| ||| | || |||| | | Sbjct 826 CATTCTCTTGTG-GACAAACTATAGGTTAGGGAAAATGGATAGA-TTCGACAGGCTGTTT 883 Query 861 GATGAAATGGTTAAAGACGGGTTTTCTCCTGATT-TATATACATACAACATCCTCCTCCA 919 ||||| |||| | ||| ||||| ||||| |||| | || ||||||||||| | || || Sbjct 884 GATGAGATGGCTCGAGATGGGTTCTCTCCGGATTCT-TACACATACAACATTTTGCTGCA 942 Query 920 CCATCTAGC--AACAGGAAACAAGCCTCTCGCTGCTCTTAACCTAC-T--AACTCATATG 974 | || | | || ||| || || |||||||||||||||| | ||| | ||| |||||| Sbjct 943 C-ATTTTGGGGAA-AGGGAATAAACCTCTCGCTGCTCTTA-C-TACGTTGAAC-CATATG 997 Query 975 AGGGAAGTTGGAGTAGAGCCCG-GTGTGATCCATTTCACTACTCTGATAGACGGGCTGAG 1033 | |||||| ||| | || |||| |||| |||| | ||||||| |||||||||| ||||| Sbjct 998 AAGGAAGTAGGAATCGA-CCCGAGTGTCCTCCACTACACTACTTTGATAGACGGTCTGAG 1056 Query 1034 CCGAGCTGGGAAGT-TAGAAGCTTGCAAATACTTTATGGACGAAATGGTGAAAGTTGGAT 1092 ||| || ||||| | | || || ||||| |||||| | || ||||||||||||| ||| | Sbjct 1057 CCGTGCAGGGAA-TCTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGTGAAAGCTGGGT 1115 Query 1093 GCA-AGCCGGATGTTGTTTGCTACACTGTTATGATCACAGGTTATATA-TCAGGTGGGGA 1150 ||| | |||||||||||||| ||||| || ||||| ||||| ||| | | | ||| || Sbjct 1116 GCAGA-CCGGATGTTGTTTGTTACACAGTGATGATAACAGGGTATGTTGT-ATCTGGAGA 1173 Query 1151 GCTCGAGAAAGCTGAAGAA-ATGTTTAAAGAGATGACAGA-AAAGGGTCAACTCCCTAAT 1208 |||||| || || ||| | ||||||| ||||||||||| |||||| ||| | || ||| Sbjct 1174 GCTCGACAAGGCA-AAGGAGATGTTTAGAGAGATGACAGTGAAAGGG-CAATTACCGAAT 1231 Query 1209 GTTTTCACATACAACTCGATGATCCGCGGGTTTTGTATGGCGGG-GAAATTCAAAGAGGC 1267 || |||||||||||||| ||||| |||||||| ||||||||||| || |||| |||||| Sbjct 1232 GTATTCACATACAACTCAATGATTCGCGGGTTGTGTATGGCGGGAGAG-TTCAGAGAGGC 1290 Query 1268 GTGCTCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTCGTGGTGTATAG 1327 ||| | |||| | ||||||||||| || |||||||||||||| |||||||| |||||||| Sbjct 1291 GTGTTGGTTGTTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAGTGTATAG 1350 Query 1328 TATACTGGTGAACAATCTAAGAAACGCAGGGAAGGTTTTAGAGGCTCACGAGGTAGTAAA 1387 || | |||||| | || ||||||| ||||||||| ||| ||| |||| | ||||| ||| Sbjct 1351 TACATTGGTGAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAAGCTCGCAAGGTAATAAG 1410 Query 1388 AGACATGGTGGAGAAAGGGCATTATGTTCATCTTATTTC-AAAGTTGAAAAAATATAGAA 1446 ||| |||||| ||||||| |||||||||||| ||| ||| |||| ||| |||||||| | Sbjct 1411 AGAGATGGTGAAGAAAGGACATTATGTTCAT-TTAGTTCCAAAGATGATGAAATATAGGA 1469 Query 1447 GAT 1449 ||| Sbjct 1470 GAT 1472 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72840990795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5