BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924077
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55630.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2279 0.0
AT3G60050.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 922 0.0
> AT1G55630.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:20791675-20793564 REVERSE LENGTH=1890
Length=1890
Score = 2279 bits (1234), Expect = 0.0
Identities = 1388/1464 (95%), Gaps = 3/1464 (0%)
Strand=Plus/Plus
Query 1 ATTTTGGATTAAACTCAAATATGAACTCTTTAGTTCATTATAGCACAAGTGTTGTAGTTC 60
|||||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||||
Sbjct 295 ATTTTGGATTAAGCTCAAATATGAACTCTGTAATTCATTATAGCACTAGTGTTGCGGTTC 354
Query 61 GTAAAGCTTCTCGCTTTCTCTTCACATCGAGGAGATTTTGCAATGGTAGCATCGGTGGTG 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 355 GTAAAGCTTCTCGCTTTCTCTTCACATCGAGGAAATTTTGCAATGGTAGCATCGGTGGTG 414
Query 121 ATGTAACCGATAATGGGACCGAAGAGCCCTTGAAGATTTCCTGGGAATCTTCTGAGATGG 180
||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 415 ATGTAACCGATAACGGGACCGAAGAGCCCTTGAAGATAACTTGGGAATCTTCGGAGATGG 474
Query 181 ATTGTGGGTTTGACGAGGAGGAACATGGTGAGAAAATCTCTGTTAGAAGAAGGTTTATGG 240
|||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 475 ATTGTGAGTTTGACCAGGAGGAAAATGGTGAGAAAATCTCTGTTAGAAAAAGGTTTATGG 534
Query 241 AGAGTGCTAAGCTCGGTGCGTCTCGGGTTCTCGATACTTTACAGCAAGATTGTCCCGGTT 300
||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 535 AGAGTACTAAACTCAGTGCGTCTCGGGTTCTCGATACGTTACAGCAAGATTGTCCCGGTT 594
Query 301 TCAATACGAAATCAGCTTTAGATGATTTGAACGTTACAATCTCAGGGCTATTAGTGAGAG 360
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 595 TCAATACGAAATCAGCTTTAGATGAATTGAATGTTTCAATCTCAGGGCTATTAGTGAGAG 654
Query 361 AGGTTCTTGTTGGGATCTTAAGGACACTGAGCTATGATAATAAGACAAGGTGTGCTAAGC 420
|||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||
Sbjct 655 AGGTTCTTGTTGGGATCTTAAGAACTCTGAGCTTTGATAATAAAACAAGGTGTGCTAAGC 714
Query 421 TAGCTTACAAGTTCTTTGTGTGGTGTGGTGGACAAGAGAATTTCAGGCACACTGCGAATT 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TCGCTTACAAGTTCTTTGTGTGGTGTGGTGGACAAGAGAATTTCAGGCACACTGCGAATT 774
Query 481 GTTATCATTTACTTATGAAGATATTTGCAGAGTGTGGTGAGTATAAAGCCATGTGCAGGC 540
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 775 GTTATCATTTACTTATGAAGATATTTGCTGAATGTGGTGAGTATAAAGCCATGTGCAGGC 834
Query 541 TAATTGACGAGATGATCAAAGACGGTTATCCAACGACGGCATGCACGTTTAATCTGTTGA 600
||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 835 TAATTGATGAGATGATCAAAGACGGTTATCCAACAACAGCATGCACGTTTAATCTATTGA 894
Query 601 TATGTACTTGCGGTGAAGCAGGCCTTGCTAGAGATGTCGTGGAGCAATTCATCAAGTCGA 660
||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 895 TATGTACTTGCGGGGAAGCAGGCCTTGCTAGAGATGTTGTTGAGCAGTTCATCAAGTCGA 954
Query 661 AAACTTTCAATTACCGACCTTACAAACACTCTTATAACGCCATTTTGCATTCTTTGCTAG 720
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 955 AAACTTTCAATTACCGACCTTATAAACACTCTTACAATGCCATTTTGCATTCTTTGCTAG 1014
Query 721 GGGTGAAACAGTACAAGCTGATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GGGTGAAACAGTACAAGCTGATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTA 1074
Query 781 CGCCGGATGTTCTGACTTACAACATTGTAATGTTTGCAAACTTTAGGTTAGGGAAAACAG 840
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CGCCAGATGTTCTGACTTACAACATTGTAATGTTTGCAAACTTTAGGTTAGGGAAAACAG 1134
Query 841 ATCGGCTTTACAGATTACTCGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTATATA 900
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1135 ATCGGCTTTATAGATTGCTAGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTGTATA 1194
Query 901 CATACAACATCCTCCTCCACCATCTAGCAACAGGAAACAAGCCTCTCGCTGCTCTTAACC 960
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CATACAACATCCTCCTCCATCATCTAGCAACAGGAAACAAGCCTCTCGCTGCTCTTAACC 1254
Query 961 TACT-AACTCATATGAGGGAAGTTGGAGTAGAGCCCGGTGTGATCCATTTCACTACTCTG 1019
| || || ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1255 TTCTGAA-TCATATGAGGGAAGTAGGAGTTGAGCCCGGTGTCATCCATTTCACTACTCTG 1313
Query 1020 ATAGACGGGCTGAGCCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAATG 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1314 ATAGACGGGCTGAGCCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAACG 1373
Query 1080 GTGAAAGTTGGATGCAAGCCGGATGTTGTTTGCTACACTGTTATGATCACAGGTTATATA 1139
|||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1374 GTGAAAGTTGGATGCACGCCAGATGTTGTTTGCTACACTGTTATGATCACAGGATATATA 1433
Query 1140 TCAGGTGGGGAGCTCGAGAAAGCTGAAGAAATGTTTAAAGAGATGACAGAAAAGGGTCAA 1199
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct 1434 TCAGGTGGGGAGCTCGAGAAAGCCGAAGAAATGTTCAAAGAAATGACAGAAAAGGGGCAA 1493
Query 1200 CTCCCTAATGTTTTCACATACAACTCGATGATCCGCGGGTTTTGTATGGCGGGGAAATTC 1259
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1494 CTCCCGAATGTTTTCACATACAATTCGATGATCCGCGGGTTTTGTATGGCGGGGAAATTC 1553
Query 1260 AAAGAGGCGTGCTCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTCGTG 1319
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1554 AAAGAGGCGTGCGCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTTGTA 1613
Query 1320 GTGTATAGTATACTGGTGAACAATCTAAGAAACGCAGGGAAGGTTTTAGAGGCTCACGAG 1379
|||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 1614 GTGTATAGTACACTGGTGAACAATCTAAAAAACGCGGGGAAGGTTTTAGAGGCTCATGAA 1673
Query 1380 GTAGTAAAAGACATGGTGGAGAAAGGGCATTATGTTCATCTTATTTCAAAGTTGAAAAAA 1439
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 GTAGTGAAGGACATGGTAGAGAAAGGGCATTATGTTCATCTTATTTCAAAGTTGAAAAAA 1733
Query 1440 TATAGAAGATCTTAGTTTTTGTTT 1463
|||||||||||||||||||| |||
Sbjct 1734 TATAGAAGATCTTAGTTTTT-TTT 1756
> AT3G60050.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:22180025-22181776 REVERSE LENGTH=1680
Length=1680
Score = 922 bits (499), Expect = 0.0
Identities = 1018/1263 (81%), Gaps = 58/1263 (5%)
Strand=Plus/Plus
Query 216 ATCTCTGTTAGAAGAAGGTTTATGGAGAGTGCTAAGC-TCGGTGCGTCTCGGGTTCTCGA 274
||||||||| | || |||||| |||||||||| || | | |||||||||| |||||||
Sbjct 239 ATCTCTGTTCGGAGTAGGTTTTTGGAGAGTGCCAATCAT-AGTGCGTCTCGTGTTCTCG- 296
Query 275 T-ACTTTACAGCAAGATTG--TCCCGGTTTCAATACGAAA-TCAGCTTTAGATGATTTGA 330
| || || |||| ||| || | | || |||||| | ||| |||| ||||||||| ||||
Sbjct 297 TGACATTGCAGCTAGA-TGAAT-CTGGATTCAATTC-AAAGTCAGTTTTAGATGAATTGA 353
Query 331 ACGTTACAATCTCAGGGCTAT-TAGTGAGAGAGGTTCTTGTTGGGATCTTAAGGACAC-T 388
| |||| | |||||||||| | ||||||| ||||||||||| ||||||||||||| || |
Sbjct 354 ATGTTAGAGTCTCAGGGCT-TCTAGTGAGGGAGGTTCTTGTAGGGATCTTAAGGA-ACTT 411
Query 389 GAGCTATGATAATAAGACAAGGTGTGCTAAGCTAGCTTACAAG-TTCTTTGTGTGGTGTG 447
|||||||||||||||| |||| ||||| || |||||||| || ||||| |||||| ||
Sbjct 412 GAGCTATGATAATAAGGCAAGATGTGCGAAACTAGCTTA-TAGATTCTTCCTGTGGTCTG 470
Query 448 GTGGACAAGAGAATTTCAGGCACACTGCGAATTGTTATCATTTACTTATGAAGATATTTG 507
| | ||||||| ||| |||||||| | ||||| ||||||||| ||||||||||||||||
Sbjct 471 GAGAACAAGAGTGTTTTAGGCACACAGTGAATTCTTATCATTTGCTTATGAAGATATTTG 530
Query 508 CAGAGTGTGGTGAGTATAAAGCCATGTGCAGGCTAATTGACGAGAT-GATCAAAGACGG- 565
|||||||||| ||||| || || ||||| ||| || |||| ||||| | || |||||||
Sbjct 531 CAGAGTGTGGAGAGTACAAGGCAATGTGGAGGTTAGTTGATGAGATGGTTC-AAGACGGA 589
Query 566 TTATCCAACGACGGC-ATGCACGTTTAATCTGTTGATATGTACTTGCGGTGAAGCAGGCC 624
|| || || || || | | ||||||||||||||||| |||| ||| |||||||||||
Sbjct 590 TT-CCCGACAACAGCGA-GGACGTTTAATCTGTTGATTTGTAGTTGTGGTGAAGCAGG-T 646
Query 625 TT-GCTAGAGATGTC-GTGGAGCAATTCATCAAGTCGAAAACTTTCAATTACCGACCTTA 682
|| || | | | | | || | ||| ||||| ||||| || ||||| |||||||||||||
Sbjct 647 TTAGCGAAACAAG-CTGTTGTGCAGTTCATGAAGTCCAAGACTTTTAATTACCGACCTTT 705
Query 683 CAAACACTCTTATAACGCCATTTTGCATTCTTTGCTAGGGGTGAAACAGTACAAGCTGAT 742
|||||||||||||||||| |||||| ||||||||||||| || |||||||| || ||||
Sbjct 706 CAAACACTCTTATAACGCGATTTTGAATTCTTTGCTAGGTGTAAAACAGTATAAATTGAT 765
Query 743 TGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTTCGCCGGATGTTCTGACTTACAA 802
||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 766 TGAGTGGGTTTACAAGCAGATGTTAGAAGACGGGTTTTCGCCAGATGTTCTGACTTATAA 825
Query 803 CATTGTAATGTTTG-CAAACTTTAGGTTAGGGAAAACAGATCGGCTTT-ACAGATTACTC 860
|||| | ||| | |||||| |||||||||||||| ||| | || |||| | |
Sbjct 826 CATTCTCTTGTG-GACAAACTATAGGTTAGGGAAAATGGATAGA-TTCGACAGGCTGTTT 883
Query 861 GATGAAATGGTTAAAGACGGGTTTTCTCCTGATT-TATATACATACAACATCCTCCTCCA 919
||||| |||| | ||| ||||| ||||| |||| | || ||||||||||| | || ||
Sbjct 884 GATGAGATGGCTCGAGATGGGTTCTCTCCGGATTCT-TACACATACAACATTTTGCTGCA 942
Query 920 CCATCTAGC--AACAGGAAACAAGCCTCTCGCTGCTCTTAACCTAC-T--AACTCATATG 974
| || | | || ||| || || |||||||||||||||| | ||| | ||| ||||||
Sbjct 943 C-ATTTTGGGGAA-AGGGAATAAACCTCTCGCTGCTCTTA-C-TACGTTGAAC-CATATG 997
Query 975 AGGGAAGTTGGAGTAGAGCCCG-GTGTGATCCATTTCACTACTCTGATAGACGGGCTGAG 1033
| |||||| ||| | || |||| |||| |||| | ||||||| |||||||||| |||||
Sbjct 998 AAGGAAGTAGGAATCGA-CCCGAGTGTCCTCCACTACACTACTTTGATAGACGGTCTGAG 1056
Query 1034 CCGAGCTGGGAAGT-TAGAAGCTTGCAAATACTTTATGGACGAAATGGTGAAAGTTGGAT 1092
||| || ||||| | | || || ||||| |||||| | || ||||||||||||| ||| |
Sbjct 1057 CCGTGCAGGGAA-TCTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGTGAAAGCTGGGT 1115
Query 1093 GCA-AGCCGGATGTTGTTTGCTACACTGTTATGATCACAGGTTATATA-TCAGGTGGGGA 1150
||| | |||||||||||||| ||||| || ||||| ||||| ||| | | | ||| ||
Sbjct 1116 GCAGA-CCGGATGTTGTTTGTTACACAGTGATGATAACAGGGTATGTTGT-ATCTGGAGA 1173
Query 1151 GCTCGAGAAAGCTGAAGAA-ATGTTTAAAGAGATGACAGA-AAAGGGTCAACTCCCTAAT 1208
|||||| || || ||| | ||||||| ||||||||||| |||||| ||| | || |||
Sbjct 1174 GCTCGACAAGGCA-AAGGAGATGTTTAGAGAGATGACAGTGAAAGGG-CAATTACCGAAT 1231
Query 1209 GTTTTCACATACAACTCGATGATCCGCGGGTTTTGTATGGCGGG-GAAATTCAAAGAGGC 1267
|| |||||||||||||| ||||| |||||||| ||||||||||| || |||| ||||||
Sbjct 1232 GTATTCACATACAACTCAATGATTCGCGGGTTGTGTATGGCGGGAGAG-TTCAGAGAGGC 1290
Query 1268 GTGCTCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTCGTGGTGTATAG 1327
||| | |||| | ||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 1291 GTGTTGGTTGTTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAGTGTATAG 1350
Query 1328 TATACTGGTGAACAATCTAAGAAACGCAGGGAAGGTTTTAGAGGCTCACGAGGTAGTAAA 1387
|| | |||||| | || ||||||| ||||||||| ||| ||| |||| | ||||| |||
Sbjct 1351 TACATTGGTGAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAAGCTCGCAAGGTAATAAG 1410
Query 1388 AGACATGGTGGAGAAAGGGCATTATGTTCATCTTATTTC-AAAGTTGAAAAAATATAGAA 1446
||| |||||| ||||||| |||||||||||| ||| ||| |||| ||| |||||||| |
Sbjct 1411 AGAGATGGTGAAGAAAGGACATTATGTTCAT-TTAGTTCCAAAGATGATGAAATATAGGA 1469
Query 1447 GAT 1449
|||
Sbjct 1470 GAT 1472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5