BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924078 Length=604 Score E Sequences producing significant alignments: (Bits) Value AT1G55640.1 | Symbols: PRA1.G1 | prenylated RAB acceptor 1.G1 |... 688 0.0 > AT1G55640.1 | Symbols: PRA1.G1 | prenylated RAB acceptor 1.G1 | chr1:20793771-20794334 FORWARD LENGTH=564 Length=564 Score = 688 bits (372), Expect = 0.0 Identities = 503/567 (89%), Gaps = 6/567 (1%) Strand=Plus/Plus Query 21 ATGTTAGCACCGGCGGAGACTGTTCTGATCACGACGGAGGAGATAAGTCCCTCTGTC-GG 79 ||||||||||||| ||||| |||||||||| || ||||||||||||||| ||| | | || Sbjct 1 ATGTTAGCACCGGGGGAGAGTGTTCTGATCCCGGCGGAGGAGATAAGTCTCTCCG-CTGG 59 Query 80 TGATGTTATCTCCATGTCGGTGCACAATCTAATAGCTTCTGTTTCTAGCTACCGTCCATG 139 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TGATGTTATCTCCTTGTCGGTGCACAATCTAATAGCTTCTGTTTCTAGCTACCGTCCATG 119 Query 140 GTGGTCGGAATTCCTAGCATTCGGTTCCATTGACCGTCCAACCTCTTTCTCCTCCGCTGC 199 |||||| ||||| ||||||||||||||||| |||||||||| |||||||||| |||||| Sbjct 120 GTGGTCAGAATTTCTAGCATTCGGTTCCATCGACCGTCCAAGCTCTTTCTCCCCCGCTGT 179 Query 200 CTCGCGTGCTAAACTCAACCTTTGCCACTTTGTTGTTAACTATTTTCTTTTAACCGCAGC 259 ||||| | |||||| |||||| |||||||| |||||||| | ||||||||||| || Sbjct 180 TTCGCGCGTTAAACTTAACCTTCACCACTTTGCGGTTAACTACGTACTTTTAACCGCTGC 239 Query 260 TTTGGTCACACTCTTCTTGATCGGTGATCCGGTGGCTCTTCTCACGCTTGCCTCCTTTGC 319 || |||||||||||||||||||||||||| |||||||| ||||| |||| ||||||| Sbjct 240 TTCCATCACACTCTTCTTGATCGGTGATCCGATGGCTCTTGTCACGGTTGCATCCTTTGT 299 Query 320 GGTCATGTGGATGCTCCTATATTGCTTTAGAGACCATCCGTTGGTCTTGTACGGTCGACA 379 | ||||||| | |||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 300 AGCCATGTGGCTACTCCTATATTTCTATAGAGACCATCCGTTGGTCTTGTACGGTCGACA 359 Query 380 TATTAGTGACCGTATAATTGTAGTTGGGCTGAT-CATTGGCTCGCTTTGGGCATTGTGGT 438 |||||| |||||| | || || ||||| |||| | |||||||||||||||||||||||| Sbjct 360 TATTAGCGACCGTGTTATCGTCTTTGGGTTGATTC-TTGGCTCGCTTTGGGCATTGTGGT 418 Query 439 TCATAAACT-GCCTCCAAAGCCTGGTTCTTGGTATTGTTACAAGTGTCTTGCTTTGTTTG 497 |||| || | |||||||| ||||| ||||||| | |||||||||||||||||||||||| Sbjct 419 TCATTAA-TAGCCTCCAATGCCTGATTCTTGGCGTCGTTACAAGTGTCTTGCTTTGTTTG 477 Query 498 GTCCACGCCGTCGTACGAAATTCAGACGACCTCTTTGTACAAGAAAAAGATGTTGTTATT 557 |||||||| || |||| |||||||||||||||||||||||||| |||||||||||| || Sbjct 478 GTCCACGCAATCATACGGAATTCAGACGACCTCTTTGTACAAGAGAAAGATGTTGTTGTT 537 Query 558 CCTTCCAATTTCCTTCATTGGAGCTGA 584 ||||||||||||||||||||||||||| Sbjct 538 CCTTCCAATTTCCTTCATTGGAGCTGA 564 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29085571113 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5