BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924078
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55640.1 | Symbols: PRA1.G1 | prenylated RAB acceptor 1.G1 |... 688 0.0
> AT1G55640.1 | Symbols: PRA1.G1 | prenylated RAB acceptor 1.G1
| chr1:20793771-20794334 FORWARD LENGTH=564
Length=564
Score = 688 bits (372), Expect = 0.0
Identities = 503/567 (89%), Gaps = 6/567 (1%)
Strand=Plus/Plus
Query 21 ATGTTAGCACCGGCGGAGACTGTTCTGATCACGACGGAGGAGATAAGTCCCTCTGTC-GG 79
||||||||||||| ||||| |||||||||| || ||||||||||||||| ||| | | ||
Sbjct 1 ATGTTAGCACCGGGGGAGAGTGTTCTGATCCCGGCGGAGGAGATAAGTCTCTCCG-CTGG 59
Query 80 TGATGTTATCTCCATGTCGGTGCACAATCTAATAGCTTCTGTTTCTAGCTACCGTCCATG 139
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGATGTTATCTCCTTGTCGGTGCACAATCTAATAGCTTCTGTTTCTAGCTACCGTCCATG 119
Query 140 GTGGTCGGAATTCCTAGCATTCGGTTCCATTGACCGTCCAACCTCTTTCTCCTCCGCTGC 199
|||||| ||||| ||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct 120 GTGGTCAGAATTTCTAGCATTCGGTTCCATCGACCGTCCAAGCTCTTTCTCCCCCGCTGT 179
Query 200 CTCGCGTGCTAAACTCAACCTTTGCCACTTTGTTGTTAACTATTTTCTTTTAACCGCAGC 259
||||| | |||||| |||||| |||||||| |||||||| | ||||||||||| ||
Sbjct 180 TTCGCGCGTTAAACTTAACCTTCACCACTTTGCGGTTAACTACGTACTTTTAACCGCTGC 239
Query 260 TTTGGTCACACTCTTCTTGATCGGTGATCCGGTGGCTCTTCTCACGCTTGCCTCCTTTGC 319
|| |||||||||||||||||||||||||| |||||||| ||||| |||| |||||||
Sbjct 240 TTCCATCACACTCTTCTTGATCGGTGATCCGATGGCTCTTGTCACGGTTGCATCCTTTGT 299
Query 320 GGTCATGTGGATGCTCCTATATTGCTTTAGAGACCATCCGTTGGTCTTGTACGGTCGACA 379
| ||||||| | |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 300 AGCCATGTGGCTACTCCTATATTTCTATAGAGACCATCCGTTGGTCTTGTACGGTCGACA 359
Query 380 TATTAGTGACCGTATAATTGTAGTTGGGCTGAT-CATTGGCTCGCTTTGGGCATTGTGGT 438
|||||| |||||| | || || ||||| |||| | ||||||||||||||||||||||||
Sbjct 360 TATTAGCGACCGTGTTATCGTCTTTGGGTTGATTC-TTGGCTCGCTTTGGGCATTGTGGT 418
Query 439 TCATAAACT-GCCTCCAAAGCCTGGTTCTTGGTATTGTTACAAGTGTCTTGCTTTGTTTG 497
|||| || | |||||||| ||||| ||||||| | ||||||||||||||||||||||||
Sbjct 419 TCATTAA-TAGCCTCCAATGCCTGATTCTTGGCGTCGTTACAAGTGTCTTGCTTTGTTTG 477
Query 498 GTCCACGCCGTCGTACGAAATTCAGACGACCTCTTTGTACAAGAAAAAGATGTTGTTATT 557
|||||||| || |||| |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 478 GTCCACGCAATCATACGGAATTCAGACGACCTCTTTGTACAAGAGAAAGATGTTGTTGTT 537
Query 558 CCTTCCAATTTCCTTCATTGGAGCTGA 584
|||||||||||||||||||||||||||
Sbjct 538 CCTTCCAATTTCCTTCATTGGAGCTGA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5