BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924080
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55680.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2265 0.0
AT3G13340.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1354 0.0
> AT1G55680.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:20804592-20807940 REVERSE LENGTH=1960
Length=1960
Score = 2265 bits (1226), Expect = 0.0
Identities = 1324/1373 (96%), Gaps = 0/1373 (0%)
Strand=Plus/Plus
Query 6 TTTATCAACTGAACTATGTCTAATTACCAAGGGGACGATGCTGAGTACATGGAAGATGTG 65
|||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 212 TTTATCAACTTAAGAATGTCTAATTATCAAGGGGATGATGCTGAGTACATGGAAGATGTG 271
Query 66 GATGATGAAATGGAAGAGGATGATTTGGATGAGGATTTTCGTGGGGATGATATGGCTGCC 125
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 272 GATGATGAAATGGATGAGGATGATTTAGATGAGGATTTTCGTGGGGATGATATGGCTGCC 331
Query 126 TCGGATTCTGATGTCGATGAGTTTGACTACTCAAATAATAAAATAGCTGATACTTCAGCT 185
|| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 332 TCTGATTCCGATGTCGATGAGTTTGACTACTCTAATAATAAAATAGCTGACACTTCAGCT 391
Query 186 GACCAAGCTCGCAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGGCTTAGTATTACG 245
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GACCAAGCCCGGAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGGCTTAGTATTACG 451
Query 246 AGAGAGAAATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAAT 305
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AGAGAGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAAC 511
Query 306 TCTGGTGAATCCTCAGGGAAAGATTGCATGGCCACACAGAAAGGGGCCCTTTTTTACGAT 365
||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 512 TCTGGGGAATCTTCAGGGAAAGATTGCATGGCCACACAGAAAGGGGCTCTTTTTTATGAT 571
Query 366 TTCTGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCCAGTTGAGGAATTTG 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTCTGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCCAGTTGAGGAATTTG 631
Query 426 GTTTGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAATATTTGGTGAGCCACTAT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GTTTGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAATATTTGGTGAGCCACTAT 691
Query 486 TCTACTTTGACATCTGGAAAGCATGAAGTTCTCAATGTTCAAGGTCATGTTTCCCCAGCT 545
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 692 TCTACTTTGACATCCGGAAAGCATGATGTTCTCAATGTTCAAGGTCATGTTTCCCCATCT 751
Query 546 GAGAAACATCCTGGAAGTTTGTTGGAGGGATTTACAAAGACTCAAGTGAGTACACTCGCA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 GAGAAACATCCTGGAAGTTTGTTGGAGGGATTTACAAAGACTCAAGTGAGTACACTCGCA 811
Query 606 GTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAACTTATATGCAAGCATCTT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAACTTATATGCAAGCATCTT 871
Query 666 GATAGACCTGGTGTGAGCTATTGTTCACGTACAACTTATGATGATAATGCTATAACCAAT 725
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 872 GATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAAT 931
Query 726 GCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTACTGCCTCGAATAATGAT 785
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 932 GCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTACTGCGTCGAATAATGAT 991
Query 786 TGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTAACCATTTTCGCTTTCCA 845
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 992 TGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTAACCAGTTTCGCTTTCCA 1051
Query 846 TGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTATTGACGATTGTGGGAGAT 905
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1052 TGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTGTTGACGATTGTGGGAGAC 1111
Query 906 AACCCAGAAGGCCTTCTGGTAGAACCCAACACTGGAAAGACGCTGGCAACGTTATCAGGA 965
||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 1112 AACCCTGAAAGCCTTCTGGTAGACCCCAACACTGGAAAGACACTGGCAACGCTATCAGGA 1171
Query 966 CATTTGGACTTTTCCTTTGCATCGGCATGGCATCCAGATGGGTTCACTTTCTCCACTGGT 1025
||| ||||||||||||||||||| |||||||| |||||||| ||||| |||||||| |||
Sbjct 1172 CATCTGGACTTTTCCTTTGCATCAGCATGGCACCCAGATGGATTCACGTTCTCCACAGGT 1231
Query 1026 AACCAGGACAAAACCTGCCGGGTTTGGGACATTCGTAACCTTTCTAAATCTGTTGCTGTC 1085
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1232 AACCAGGACAAGACCTGCCGGGTTTGGGACATTCGTAACCTGTCAAAATCTGTTGCTGTC 1291
Query 1086 TTGAGGGGTAACCTTGGAGCAATCCGATCCATCCGCTACACATCTGATGGGAAATACATG 1145
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1292 TTGAGGGGTAACCTTGGAGCAATCCGATCCATTCGCTACACATCTGATGGGAAGTACATG 1351
Query 1146 GCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTCTCAAACGGGTATGAAACG 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTCTCAAACGGGTATGAAACG 1411
Query 1206 GAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCATTTAGCCCCGACACAGAA 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 GAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCATTTAGCCCCGACACAGAA 1471
Query 1266 GCACTCTTCATCGGCGTTTGGGACCGCACTTACGGAAGTCTAATTGAGTATGGCCGGCGC 1325
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1472 GCACTCTTCATAGGCGTTTGGGACCGCACTTACGGAAGTCTAATTGAGTATAGCCGGCGC 1531
Query 1326 CACAACTACTCCTACCTTGATTCATTTCTATAATCACCCGAGATATCAGAGGA 1378
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 1532 CACAACTACTCCTACCTTGATTCATTTCTATGATCACCCGACATACCAGAGGA 1584
> AT3G13340.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:4331756-4335073 FORWARD LENGTH=2055
Length=2055
Score = 1354 bits (733), Expect = 0.0
Identities = 1164/1373 (85%), Gaps = 25/1373 (2%)
Strand=Plus/Plus
Query 2 TTTATTTATC-AACTGAACTATGTCTAATTACCAAGGGGACGATGCTGAGTACATGGAAG 60
|||||||||| | | || ||||||||||| | ||| || |||||||||||||||||||
Sbjct 222 TTTATTTATCTACCAAAAGAATGTCTAATTATCGAGGAGATGATGCTGAGTACATGGAAG 281
Query 61 ATGTGGATGATGAAATGGAAGA----G--GATGATTTGGATGAGGATTTTCGTGGGGATG 114
| || |||||||| |||||||| | |||||| |||||||||| |||||||| ||||
Sbjct 282 ACGTAGATGATGAGATGGAAGATGTTGAAGATGATATGGATGAGGAGTTTCGTGGTGATG 341
Query 115 AT-ATGGCTGCCTCGGATTCTGATGTCGATGAGTTTGACTACTCAAATAATAAAATAGCT 173
|| ||| ||| || |||||||| || || || |||||||| || || |||||| |||||
Sbjct 342 ATCTTGG-TGCTTCAGATTCTGACGTTGAAGAATTTGACTATTCGAACAATAAAGTAGCT 400
Query 174 GATACTTCAGCTGACCAAGCTCGCAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGG 233
||||| | ||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 401 GATACCACGGCTGAGCAAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGA 460
Query 234 CTTAGTATTACGAGAGAGAAATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAA 293
|||| |||| | |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 461 CTTAATATTTCTAGAGAGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAA 520
Query 294 AATGTCCCTAATTCTGGTGAATCCTCAGGGAAA-GATTGCATGGCCACACAGAAAGG-GG 351
||||||||||||||||| ||||| ||| | ||| | ||||| || |||||||||||| ||
Sbjct 521 AATGTCCCTAATTCTGGAGAATCATCA-GAAAAGGTTTGCAAGGTCACACAGAAAGGAGG 579
Query 352 CCCTTTTTTACGATTTCTGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCC 411
|| ||||| || |||||||||||| || ||||||| || || | ||| || |||||||
Sbjct 580 -ACTATTTTATGACTTCTGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCC 638
Query 412 AGTTGAGGAATTTGGTTTGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAATATT 471
|| |||| |||||||| |||||||||||||||||||| || || ||||||||| ||| ||
Sbjct 639 AGCTGAGAAATTTGGTATGGGCAACTTCTAAGCACGACGTGTATCTTATGTCA-AATTTT 697
Query 472 -TGGTGAGC-CACTATTCTACTTTGACATCTGGAAAGCATGAAGTTCTCAATGTTCAAGG 529
|||| | | || |||||| || | || |||||||||||||||||||||||||| | ||
Sbjct 698 CTGGTTA-CACATTATTCTTCTCTAACGTCTGGAAAGCATGAAGTTCTCAATGTCCGTGG 756
Query 530 TCATGTTTCCCCAGCTGAGAAACATCCTGGAAGTTTG-TTGGAGGGATTTACAAAGACTC 588
||||||| | ||| |||||||||||||||||||||| ||| ||| |||||| ||||||
Sbjct 757 TCATGTTGCGCCATCTGAGAAACATCCTGGAAGTTTACTTGAAGG-ATTTACGCAGACTC 815
Query 589 AAGTGAGTACACTCGCAGTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAAC 648
|||| |||||||| ||||| | |||| | ||| | ||||| || || |||||||||||||
Sbjct 816 AAGTAAGTACACTTGCAGTAAAAGATGACTTTCTGGTTGCTGGCGGGTTTCAAGGAGAAC 875
Query 649 TTATATGCAAGCATCTTGATAGACCTGGTGTGAGCTATTGTTCACGTACAACTTATGATG 708
|||| |||||||||||||||||||| ||||| |||| ||| || |||| ||||||||||
Sbjct 876 TTATTTGCAAGCATCTTGATAGACCGGGTGTCAGCTTTTGCTCTCGTATGACTTATGATG 935
Query 709 ATAATGCTATAACCAATGCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTA 768
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 936 ATAATGCTATAACCAATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTA 995
Query 769 CTGCCTCGAATAATGATTGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTA 828
|||| || |||||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 996 CTGCGTCAAATAATGACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTA 1055
Query 829 ACCATTTTCGCTTTCCATGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTAT 888
| ||||| || ||||| ||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 1056 AGCATTTCCGTTTTCCTTGGCCAGTGAATCACGCATCTTTGAGTCCTGATGGTAAATTAC 1115
Query 889 TGACGATTGTGGGAGATAACCCAGAAGGCCTTCTGGTAGAACCCAACACTGGAAAGACGC 948
|| | ||||| ||||| ||||| || |||||| | ||||| |||||||| |||||||||
Sbjct 1116 TGGCTATTGTTGGAGACAACCCGGAGGGCCTTATTGTAGACCCCAACACAGGAAAGACGT 1175
Query 949 TGGCAACGTTATCAGGACATTTGGACTTTTCCTTTGCATCGGCATGGCATCCAGATGG-G 1007
||| ||| |||||||||| ||||||||||||||||| || || |||||||| ||||| |
Sbjct 1176 TGGAAACACTATCAGGACACTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAG 1235
Query 1008 TTCACTTTCTCCACTGGTAACCAGGACAAAACCTGCCGGGTTTGGGACATTCGTAACCTT 1067
| ||||||||| || || ||||| || || || || || || |||||||| ||||||||
Sbjct 1236 T-CACTTTCTCTACAGGAAACCAAGATAAGACTTGTCGTGTATGGGACATCCGTAACCTA 1294
Query 1068 TCTAAATCTGTTGCTGTCTTGAGGGGTAACCTTGGAGCAATCCGATCCATCCGCTACACA 1127
||| | |||||| ||||||||| ||||||||| ||||||||||| || ||||||||||||
Sbjct 1295 TCTCAGTCTGTTACTGTCTTGAAGGGTAACCTGGGAGCAATCCGGTCAATCCGCTACACA 1354
Query 1128 TCTGATGGGAAATACATGGCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTC 1187
|| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1355 TCAGATGGAAAATACATGGCCATGGCTGAACCGGCTGACTTTGTCCATGTCTATGATGTC 1414
Query 1188 TCAAACGGGTATGAAACGGAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCA 1247
||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||
Sbjct 1415 TCAAACGGGTATGAAACAGAGCAGGAAATCGACTTCTTTGGGGAAATCTCTGGAATATC- 1473
Query 1248 TTT-AGCCCCGACACAGAAGCACTCTTCATCGGCGTTTGGGACCGCACTTACGGAAGTCT 1306
||| ||||| |||||||| || || || || || || |||||||||||||| || || ||
Sbjct 1474 TTTCAGCCCTGACACAGAGGCGCTATTTATTGGGGTATGGGACCGCACTTATGGTAGCCT 1533
Query 1307 AATTGAGTATGGCCGGCGCCAC-AACTACTCCTACCTTGATTCATTTCTATAA 1358
|||||| ||| |||||| | ||||| ||||||||||| || | ||| |||
Sbjct 1534 CCTTGAGTTTGGTCGGCGC-AGGAACTATTCCTACCTTGACTCGTATCTTTAA 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5