BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924084 Length=341 Score E Sequences producing significant alignments: (Bits) Value AT1G53935.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 183 7e-46 > AT1G53935.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23180.1); Has 29 Blast hits to 24 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20142065-20142866 REVERSE LENGTH=760 Length=760 Score = 183 bits (99), Expect = 7e-46 Identities = 159/186 (85%), Gaps = 11/186 (6%) Strand=Plus/Plus Query 73 CCTTTGGTCAAGAGTACGTCTGTTTCGTTAAGGCTGAGAATCCGACTTGTTTGGGGATTG 132 ||||| ||||||||| ||| | ||| ||||||||||||||||||| |||||| || |||| Sbjct 555 CCTTTTGTCAAGAGTTCGTTTCTTTTGTTAAGGCTGAGAATCCGAATTGTTTTGGTATTG 614 Query 133 ATGAAG-CAGAGTGCATTGCAAGCTGGGAATATAAGGTCAAAGATGGACCAAAGAAGCGA 191 |||||| || |||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 615 ATGAAGCCA-AGTGGATTGCAAGCTGGG---GGAAGGTCAAAGATGGACCAAAGAAGCGA 670 Query 192 GAGATGGaaaaaa-aGTTGAAGAA-ACTGCA-GGCTGTGCAAGCGGAGCTCTGTATGATG 248 ||||||||||| | | |||| ||| | || | |||| |||||||||||| ||||||||| Sbjct 671 GAGATGGAAAACACA-TTGACGAAGA-TG-ATGGCTAAGCAAGCGGAGCTTTGTATGATG 727 Query 249 AGGATT 254 |||||| Sbjct 728 AGGATT 733 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15934876433 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5