BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924084

Length=341
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53935.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   183    7e-46


> AT1G53935.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G23180.1); 
Has 29 Blast hits to 24 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:20142065-20142866 
REVERSE LENGTH=760
Length=760

 Score =  183 bits (99),  Expect = 7e-46
 Identities = 159/186 (85%), Gaps = 11/186 (6%)
 Strand=Plus/Plus

Query  73   CCTTTGGTCAAGAGTACGTCTGTTTCGTTAAGGCTGAGAATCCGACTTGTTTGGGGATTG  132
            ||||| ||||||||| ||| | ||| ||||||||||||||||||| |||||| || ||||
Sbjct  555  CCTTTTGTCAAGAGTTCGTTTCTTTTGTTAAGGCTGAGAATCCGAATTGTTTTGGTATTG  614

Query  133  ATGAAG-CAGAGTGCATTGCAAGCTGGGAATATAAGGTCAAAGATGGACCAAAGAAGCGA  191
            |||||| || |||| |||||||||||||     |||||||||||||||||||||||||||
Sbjct  615  ATGAAGCCA-AGTGGATTGCAAGCTGGG---GGAAGGTCAAAGATGGACCAAAGAAGCGA  670

Query  192  GAGATGGaaaaaa-aGTTGAAGAA-ACTGCA-GGCTGTGCAAGCGGAGCTCTGTATGATG  248
            ||||||||||| | | |||| ||| | || | ||||  |||||||||||| |||||||||
Sbjct  671  GAGATGGAAAACACA-TTGACGAAGA-TG-ATGGCTAAGCAAGCGGAGCTTTGTATGATG  727

Query  249  AGGATT  254
            ||||||
Sbjct  728  AGGATT  733



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15934876433


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5