BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924087
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02770.1 | Symbols: | 4'-phosphopantetheinyl transferase su... 691 0.0
AT4G00580.1 | Symbols: | COP1-interacting protein-related | ch... 514 1e-144
AT2G01800.1 | Symbols: | COP1-interacting protein-related | ch... 377 1e-103
AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase... 222 7e-57
> AT2G02770.1 | Symbols: | 4'-phosphopantetheinyl transferase
superfamily | chr2:775482-779786 REVERSE LENGTH=2161
Length=2161
Score = 691 bits (374), Expect = 0.0
Identities = 597/700 (85%), Gaps = 33/700 (5%)
Strand=Plus/Plus
Query 670 AATGTGTGTTTGTAACTACAAACATTGATACTCGTCTCGGCGTTCT-ATCGGACAAGGAT 728
||||||| ||||||||||| || || ||||||||||| ||| |||| || ||||||||||
Sbjct 20 AATGTGTCTTTGTAACTACTAATATGGATACTCGTCTGGGCCTTCTCAT-GGACAAGGAT 78
Query 729 GATAGTGTATCTACTTTCAGAGACAAAATCTGCAAAGAGCATGAACAGTGTTTCCCAAGT 788
|||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||
Sbjct 79 GATACTGTATCTACATTCAAAGAGAAAATCTGCAAAGAGCATGAACAGTGTTTCCCTAGT 138
Query 789 TTTGGGAAA-ATCACCATCTCTGCTTTGAAGGTTAGA-TGTGGTGGTCAACTTTATCATT 846
||||| ||| ||||| ||||| ||||||||||||| | ||| | ||||||||||||||||
Sbjct 139 TTTGG-AAACATCACTATCTCCGCTTTGAAGGTTA-ACTGTTGCGGTCAACTTTATCATT 196
Query 847 TGGTTGATTCGCTGATTTTGAACATAGCTTTCCCAAGCAACGACTCGTTTCTATTTGTGG 906
| |||||||| |||| |||||||| ||||||| ||||||||| |||||||| ||||| |
Sbjct 197 TAGTTGATTCTCTGACTTTGAACACGGCTTTCCAAAGCAACGAATCGTTTCTTTTTGTTG 256
Query 907 ACGTGGTGAGTGTTGAGGAGAAGGGTATTATGCTGACTGGAGAAGCTGCTTTTTCAAACC 966
| ||| |||| |||||||||||||||| ||||||||||||||| || |||| |||||||
Sbjct 257 ATGTGCTGAGGGTTGAGGAGAAGGGTAAAATGCTGACTGGAGAAACTCCTTTGTCAAACC 316
Query 967 CTAAGTT-ACTTGAGAGAGAGACCAATGATCTGACGATTAAGGAAGCTCTGGTAACACAA 1025
||| ||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 317 CTA-GTTTACTTGAGAGAGAGACCAATGATCTGACTATTAAGGAAGCTCCGGTAACCCAA 375
Query 1026 GCTGCTGATAAGAAAACTAGAAAGAGGAAACAT-AAAACTTCAGATAGCGCGCATGCCAA 1084
|||| |||| | ||||||| ||||||||||| | |||| || ||||| | || ||
Sbjct 376 GCTGGTGATGATAAAACTAAAAAGAGGAAAC-TGAAAAGTTTGGATAGTAC-CAA---AA 430
Query 1085 CGAAAGTCGTAAGAAACGCTCTCTTGGTGA-CGAGTCAAGTG-ATAAAGGAGAGGTTCCA 1142
||| ||| ||||||||| |||||||| || | ||||||||| | |||||||||||| |
Sbjct 431 -GAA-GTCATAAGAAACGATCTCTTGGGGATC-AGTCAAGTGGA-AAAGGAGAGGTTG-A 485
Query 1143 A-CT--GG-AA---CA--AT-AGGCAAAGACCTTGAAAAGGGAGAAAAGAGTGCTGCTAC 1192
|| || || || | ||| ||||| ||||||||||||||||| |||||||||||
Sbjct 486 GTCTTTGGCAATGTCACCAACAGGAAAAGATCTTGAAAAGGGAGAAAAAAGTGCTGCTAC 545
Query 1193 GGTTGAACAAGAGAAGGATCTTGCACTTGTGGATGATGAGAAAGAGAGTCACAAAGATGA 1252
| |||| |||||||| |||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 546 GATTGACCAAGAGAATGATCTTGCACTTGTGGATGATGAGAACGAGAGTCATGAAGAAGA 605
Query 1253 TGTTTGTTTAGGAGCAATAGTCCAAGCTCCAAGTGCTGC-AAATAATCTTTTAACTGCTG 1311
|||| || ||||||||||||| |||||||||||||| | ||| ||||||||||||||||
Sbjct 606 TGTTCGTGTAGGAGCAATAGTAGAAGCTCCAAGTGCTTCGAAA-AATCTTTTAACTGCTG 664
Query 1312 AATTGTTAGACGTCAATCAATCCGCTGATGTTGAGAGCGA 1351
|||| |||||| |||||||||| ||||||||||||| |||
Sbjct 665 AATTTTTAGACATCAATCAATCTGCTGATGTTGAGAACGA 704
Score = 111 bits (60), Expect = 2e-23
Identities = 67/70 (96%), Gaps = 1/70 (1%)
Strand=Plus/Plus
Query 1467 AAAGATGCTGATGAGGCTACTACATCTGTGAAGGCTGCTAAGAAAGGAAGGGCAAAGAAA 1526
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 733 AAATATGCTGATGAGGCTACTACATCTGTGAAGGCTGCTAAGAAAGGAAGGACAAAGAAA 792
Query 1527 GACAAG-CAG 1535
|||||| |||
Sbjct 793 GACAAGGCAG 802
> AT4G00580.1 | Symbols: | COP1-interacting protein-related |
chr4:248713-250258 FORWARD LENGTH=954
Length=954
Score = 514 bits (278), Expect = 1e-144
Identities = 476/567 (84%), Gaps = 32/567 (6%)
Strand=Plus/Plus
Query 112 GTGAAGTAGCTGagaagaaagcgaagaagagaaaatcaaaaagttccgacaaaagtagaa 171
|||||| || |||||| ||| ||| |||||||||||| |||||| || |||| |||||||
Sbjct 305 GTGAAGCAGTTGAGAAAAAAACGAGGAAGAGAAAATCGAAAAGTGCCAACAATAGTAGAA 364
Query 172 agaaaCCCTCCGTAGAGACACCAACAGAAGCAAAAGACGATGAAAAAGGCGAGGGAAGTG 231
|||||| |||| ||||||| ||||| |||||||||| | ||||| || ||||||| ||
Sbjct 365 AGAAACTCTCCATAGAGACGCCAACGGAAGCAAAAGGCCTTGAAAGTGGTGAGGGAACTG 424
Query 232 GCACTAGAATGGGAGAGAACCAGCAA-ATTTGTGATGCAGACCAAGAGGAGCCTGTTGAT 290
|||||| ||| |||||| ||| || |||||||||| ||| |||||||| ||||| |||
Sbjct 425 TCACTAGGTTGGAAGAGAATCAG-AATATTTGTGATGTAGATCAAGAGGAACCTGTCGAT 483
Query 291 GGTCATTTCATTGATGTTGAGGCC-AGTCTTGATCTTAT-GGGGACAATGGAACAAGAC- 347
|||||| ||| |||||||||||| || |||||||| | |||||||| |||||||||
Sbjct 484 GGTCATACCATAGATGTTGAGGCCAAG-ATTGATCTT-TCAGGGACAATCGAACAAGACG 541
Query 348 -C-TTCAAAAGGAGGTAGGAAATGCTGATTTAGTCATGATTGATGACCAAGAGAAGGATC 405
| ||||||||||||||| ||||||||||||| ||||| | ||||||||| |||||||
Sbjct 542 ACGTTCAAAAGGAGGTAGCAAATGCTGATTTAAACATGA-T--TGACCAAGACAAGGATC 598
Query 406 TTGAGAAAGCTTTAATGGTTGTGGATAATCTTTTAACTGAATTAAACCAATA-TACTGAT 464
|| | || || | ||||||||| || |||||||||||||| | || ||||
Sbjct 599 TT--G-AA-----AA------T-GATAATCTTCTAGCTGAATTAAACCAA-ACTAGTGAT 642
Query 465 GATGTTGAGAACGAAGGTCTCATAGTAGATCTTGTTAATGCTACTTCTGAAGCAATTAAA 524
|||| |||||| ||||| |||||| | |||||||||||||||||||||||| ||| ||
Sbjct 643 GATGCTGAGAAAGAAGGGATCATAG--G-TCTTGTTAATGCTACTTCTGAAGCTATTGAA 699
Query 525 AACGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAG 584
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 700 AACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAG 759
Query 585 CCTAAGAAGaaaaaaaGATCAAAGAAAGGCAAGACTCCGGCTAAAGAAGATGCTCTAGTT 644
||||| |||||||| ||| ||||||||| |||||||||| |||||||||||| |||||||
Sbjct 760 CCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTCTAGTT 819
Query 645 GCTTCTAGCTCAAGGAACGCTGGGGAA 671
|||||||||||||||||||||| ||||
Sbjct 820 GCTTCTAGCTCAAGGAACGCTGAGGAA 846
> AT2G01800.1 | Symbols: | COP1-interacting protein-related |
chr2:343766-345254 REVERSE LENGTH=915
Length=915
Score = 377 bits (204), Expect = 1e-103
Identities = 338/397 (85%), Gaps = 32/397 (8%)
Strand=Plus/Plus
Query 282 CCTGTTGATGGTCATTTCATTGATGTTGAGGCC-AGTCTTGATCTTAT-GGGGACAATGG 339
||||| ||||||||| |||||||||||||||| || ||||||||| | ||||||||||
Sbjct 520 CCTGTCGATGGTCATACCATTGATGTTGAGGCCAAG-CTTGATCTT-TCAGGGACAATGG 577
Query 340 AAC-A-A-GACCTTCAAAAGGAGGTAGGAAATGCTGATTTAGTCATGATTGATGACCAAG 396
||| | | |||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 578 AACAAGACGACCTTCAAAAGGAGGTAACAAATGCTGATTTAGTCATGA--G-TGACCAAG 634
Query 397 AGAAGGATCTTGAGAAAGCTTTAATGGTTGTGGATAATCTTTTAACTGAATTAAACCAAT 456
| ||||||||| | || || |||||||||| || |||||||| |||||
Sbjct 635 ACAAGGATCTT--G-AA-----AA-------GGATAATCTTCTAGCTGAATTACACCAA- 678
Query 457 A-TACTGATGATGTTGAGAACGAAG-GTCTCATAGTAGATCTTGTTAATGCTACTTCTGA 514
| ||||||||||| |||||| |||| | |||||| | |||||||||||||||| | ||
Sbjct 679 ACTACTGATGATGCTGAGAAAGAAGAG-ATCATAG--G-TCTTGTTAATGCTACTCCGGA 734
Query 515 AGCAATTAAAAACGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAA 574
||| ||| | ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 735 AGCTATTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAA 794
Query 575 ATCTGAGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCAAGACTCCGGCTAAAGAAGA 634
||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 795 ATCTGAGAAGCCTAAAAAGAAAAAAAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGA 854
Query 635 TGCTCTAGTTGCTTCTAGCTCAAGGAACGCTGGGGAA 671
|| ||||||||||||||||||||||||||||| ||||
Sbjct 855 TGGTCTAGTTGCTTCTAGCTCAAGGAACGCTGAGGAA 891
> AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:20980369-20983979 REVERSE
LENGTH=699
Length=699
Score = 222 bits (120), Expect = 7e-57
Identities = 183/212 (86%), Gaps = 10/212 (5%)
Strand=Plus/Plus
Query 410 GAAAGCTTTAATGGTTGTGGATAATCTTTTAACTGAATTAAACC-AATATACTGATGATG 468
||||||||||| ||||| ||||||||| || |||||||||||| || | ||||||||||
Sbjct 333 GAAAGCTTTAAAAGTTGTAGATAATCTTCTAGCTGAATTAAACCAAACA-ACTGATGATG 391
Query 469 TTGAGAACGAAGGTCTCATAGTAGATCTTGTTAATGCTACTTCTGAAGCAATTAAAAACG 528
|||||| ||||| || | ||||| |||||||||||||||||||||| ||| ||||||
Sbjct 392 CTGAGAAAGAAGGGATC--A-TAGATGTTGTTAATGCTACTTCTGAAGCTATTGAAAACG 448
Query 529 AAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCC 586
|||||| || | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 AAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCC 506
Query 587 TAAGAAGaaaaaaaGATCAAAGAAAGGCAAGA 618
||| |||||||| || ||||||||| |||||
Sbjct 507 TAAAAAGAAAAAG-GAGCAAAGAAAGTCAAGA 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81023679630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5