BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg924089 Length=1005 Score E Sequences producing significant alignments: (Bits) Value AT1G53370.1 | Symbols: | F-box and associated interaction doma... 237 2e-61 > AT1G53370.1 | Symbols: | F-box and associated interaction domains-containing protein | chr1:19910516-19911646 FORWARD LENGTH=1068 Length=1068 Score = 237 bits (128), Expect = 2e-61 Identities = 448/592 (76%), Gaps = 64/592 (11%) Strand=Plus/Plus Query 411 TTTTGATATTGGAGACTGGAAAACGTCTATGGAGGACGATCCAAGACCCAGTACCTAGCC 470 |||||| ||||||||||||| ||||| ||||| |||||||||| ||||||||| | || Sbjct 524 TTTTGACATTGGAGACTGGAGAACGTTTATGGCGGACGATCCACGACCCAGTA-AT-TCC 581 Query 471 A--TTCTTTTATGGATGATGACGGAATATTCATAAATGGTATTTTGTATTACATG--GGT 526 | || || ||| || |||| | ||||| |||||||||| ||||||||| | || | | Sbjct 582 ACGTTATTCTATTAATTATGATGCAATATGCATAAATGGTGTTTTGTATT-C-TGAAGCT 639 Query 527 TATTTTGGAGGTCTATGTT-TGAAGATAGTTTGCTTCGACTTTAGGCTTGAGAAATTTGG 585 |||| | ||| || || | ||||||||||| || ||||||| | |||||||| | | Sbjct 640 TATTATCAAGG---ATCTTCT-AAGATAGTTTGTTTTGACTTTAAGATTGAGAAAGTCAG 695 Query 586 CGTTGTTAA-ATTAGATAAAGACA--TGCAAATTATTCCCAAGTTAACTCTGTTCAACTG 642 | ||||||| ||| ||| | || ||| || | || | | | | |||||||||| Sbjct 696 CTTTGTTAACATT-GAT---GGCATGTGC-AA-T-TT-GC--G-T---T-TGTTCAACTG 740 Query 643 CAAAGGTAAATTAGGAGTACATCAGCATATCGGCATGT-GGTGT-G-AA-GTAAAAAGTT 698 ||||||||||||||| ||||||||| ||| | | | | || | | || | ||||| || Sbjct 741 CAAAGGTAAATTAGGTGTACATCAG--TAT-GACGT-TCAGTCTAGAAACG-AAAAACTT 795 Query 699 TTGCCTTGTGGGTTCTAGAAGATGCTGGAGAACATAAATGGTCCAAACGTATATTCATAC 758 || || |||||||||||||||| | ||||||||||||||||| |||||| |||| Sbjct 796 GTG--TTCCATGTTCTAGAAGATGCTGAAAAACATAAATGGTCCAAAAGTATATGCATAT 853 Query 759 TGCCATCCATAG--TCAGGTTCCAGATGTTTGTTGGAATGACAGGTACCGGAGAGATTGT 816 |||||||| ||| || || | | | |||||| ||| || |||| ||||||||||| Sbjct 854 TGCCATCCGTAGTCTCCGG--GAAAAGGATTGTTGAAATTACTTGTACGGGAGAGATTGT 911 Query 817 GTTTTCGCCATGCAAGAGCTTTCAACCAAACCCTTTCTACATTTTCTTCTACAATATCGA 876 ||||||||||| | | ||| || | | ||||||||||||||||||||||||||||||| Sbjct 912 GTTTTCGCCATCCGGGGGCTCTCTA-C--ACCCTTTCTACATTTTCTTCTACAATATCGA 968 Query 877 GAGGAACACTGT-TACAAGAATCCATATTCA-GGGATTTGAAGAGTTTGAGCATCATCGA 934 ||| || ||| | ||||||| |||| || || ||||||| || ||| || | | || | Sbjct 969 GAGAAAGACT-TATACAAGAGTCCAAAT-CAAGGGATTTAAAAAGTATG--C-TGATTG- 1022 Query 935 ACTTCTGTTCAGACTATTT-TAAACTTTGTAGAGGATGTGAAGTTTATCTAA 985 | ||||| ||| ||| || |||||||||||||| |||||| || ||| Sbjct 1023 -C----GTTCACACT-TTTCTAGACTTTGTAGAGGATACGAAGTTGATTTAA 1068 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49229464060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5