BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924089
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53370.1 | Symbols: | F-box and associated interaction doma... 237 2e-61
> AT1G53370.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:19910516-19911646 FORWARD LENGTH=1068
Length=1068
Score = 237 bits (128), Expect = 2e-61
Identities = 448/592 (76%), Gaps = 64/592 (11%)
Strand=Plus/Plus
Query 411 TTTTGATATTGGAGACTGGAAAACGTCTATGGAGGACGATCCAAGACCCAGTACCTAGCC 470
|||||| ||||||||||||| ||||| ||||| |||||||||| ||||||||| | ||
Sbjct 524 TTTTGACATTGGAGACTGGAGAACGTTTATGGCGGACGATCCACGACCCAGTA-AT-TCC 581
Query 471 A--TTCTTTTATGGATGATGACGGAATATTCATAAATGGTATTTTGTATTACATG--GGT 526
| || || ||| || |||| | ||||| |||||||||| ||||||||| | || | |
Sbjct 582 ACGTTATTCTATTAATTATGATGCAATATGCATAAATGGTGTTTTGTATT-C-TGAAGCT 639
Query 527 TATTTTGGAGGTCTATGTT-TGAAGATAGTTTGCTTCGACTTTAGGCTTGAGAAATTTGG 585
|||| | ||| || || | ||||||||||| || ||||||| | |||||||| | |
Sbjct 640 TATTATCAAGG---ATCTTCT-AAGATAGTTTGTTTTGACTTTAAGATTGAGAAAGTCAG 695
Query 586 CGTTGTTAA-ATTAGATAAAGACA--TGCAAATTATTCCCAAGTTAACTCTGTTCAACTG 642
| ||||||| ||| ||| | || ||| || | || | | | | ||||||||||
Sbjct 696 CTTTGTTAACATT-GAT---GGCATGTGC-AA-T-TT-GC--G-T---T-TGTTCAACTG 740
Query 643 CAAAGGTAAATTAGGAGTACATCAGCATATCGGCATGT-GGTGT-G-AA-GTAAAAAGTT 698
||||||||||||||| ||||||||| ||| | | | | || | | || | ||||| ||
Sbjct 741 CAAAGGTAAATTAGGTGTACATCAG--TAT-GACGT-TCAGTCTAGAAACG-AAAAACTT 795
Query 699 TTGCCTTGTGGGTTCTAGAAGATGCTGGAGAACATAAATGGTCCAAACGTATATTCATAC 758
|| || |||||||||||||||| | ||||||||||||||||| |||||| ||||
Sbjct 796 GTG--TTCCATGTTCTAGAAGATGCTGAAAAACATAAATGGTCCAAAAGTATATGCATAT 853
Query 759 TGCCATCCATAG--TCAGGTTCCAGATGTTTGTTGGAATGACAGGTACCGGAGAGATTGT 816
|||||||| ||| || || | | | |||||| ||| || |||| |||||||||||
Sbjct 854 TGCCATCCGTAGTCTCCGG--GAAAAGGATTGTTGAAATTACTTGTACGGGAGAGATTGT 911
Query 817 GTTTTCGCCATGCAAGAGCTTTCAACCAAACCCTTTCTACATTTTCTTCTACAATATCGA 876
||||||||||| | | ||| || | | |||||||||||||||||||||||||||||||
Sbjct 912 GTTTTCGCCATCCGGGGGCTCTCTA-C--ACCCTTTCTACATTTTCTTCTACAATATCGA 968
Query 877 GAGGAACACTGT-TACAAGAATCCATATTCA-GGGATTTGAAGAGTTTGAGCATCATCGA 934
||| || ||| | ||||||| |||| || || ||||||| || ||| || | | || |
Sbjct 969 GAGAAAGACT-TATACAAGAGTCCAAAT-CAAGGGATTTAAAAAGTATG--C-TGATTG- 1022
Query 935 ACTTCTGTTCAGACTATTT-TAAACTTTGTAGAGGATGTGAAGTTTATCTAA 985
| ||||| ||| ||| || |||||||||||||| |||||| || |||
Sbjct 1023 -C----GTTCACACT-TTTCTAGACTTTGTAGAGGATACGAAGTTGATTTAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5