BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924090
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55750.1 | Symbols: | BSD domain (BTF2-like transcription f... 2931 0.0
AT3G61420.1 | Symbols: | BSD domain (BTF2-like transcription f... 2239 0.0
> AT1G55750.1 | Symbols: | BSD domain (BTF2-like transcription
factors, Synapse-associated proteins and DOS2-like proteins)
| chr1:20840195-20845182 REVERSE LENGTH=2077
Length=2077
Score = 2931 bits (1587), Expect = 0.0
Identities = 1733/1804 (96%), Gaps = 7/1804 (0%)
Strand=Plus/Plus
Query 7 TTCTAGTGTTGGATATGGCTGGTGGGCAAGTGGAGAAGCGAGTCAAATACAAGAGCTCTG 66
||||| |||||||||||||||||||||| | ||||||| |||||||||||||||| |||
Sbjct 34 TTCTACAGTTGGATATGGCTGGTGGGCAAATAGAGAAGCTAGTCAAATACAAGAGCACTG 93
Query 67 TCAAGGATCCTGGAACTCCTGGATTTCTCAGAATTAGAGAAGGGATGTTGCTCTTCGTCC 126
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 TCAAGGATCCAGGAACTCCTGGATTTCTCAGAATTAGAGAAGGGATGTTGCTCTTCGTCC 153
Query 127 CTAATGATCCCAAATCAGATTCAAAGCTCAAAGTGCTCACCCAGAACATCAAAAGTCaaa 186
|||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||
Sbjct 154 CTAATGATCCCAAATCAGATTCTAAGCTCAAAGTACTTACTCAGAACATCAAAAGTCAAA 213
Query 187 aaaaTACAAAAGAAGGATCAAATAAACCTCCTTGGCTCAATCTGACCAACAAGCTGGGAA 246
|| |||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 214 AATATACCAAAGAAGGATCAAATAAACCTCCTTGGCTCAATCTCACCAACAAGCAGGCAA 273
Query 247 AGAGTCATATCTTTGAGTTTGAGAATTATCCTGACATGCATGCTTGCCGTGATTTCATCA 306
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 274 AGAGTCATATCTTTGAGTTTGAAAATTATCCCGACATGCATGCTTGCCGTGATTTCATCA 333
Query 307 CTAATGCCCTTGCTAAATGTGAAGAGGAGCCTAATAAATCCGTTGTCTCGACATCTTCCG 366
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 334 CTAAGGCCCTTGCTAAATGTGAATTGGAGCCTAATAAATCCGTTGTCTCGACATCTTCCG 393
Query 367 AGCAACTCAGTATTAAGGAATTGGAGCTACGCTTCAAGCTTCTGAGAGAAAATAGTGAGC 426
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 394 AGCAACTCAGTATTAAGGAATTGGAGCTGCGCTTCAAGCTTCTGAGAGAAAATAGTGAGC 453
Query 427 TGCAGAGATTACATAAGCAATTTGTGGAAAGTAAAGTACTGGCGGAAGATGAATTCTGGG 486
|||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 454 TGCAGAGATTGCATAAGCAATTTGTGGAAAGTAAAGTACTGACTGAAGATGAATTCTGGG 513
Query 487 CTACAAGAAAGAAATTACTTGGTAAAGATTCCATCAGAAAGTCAAAACAGCAGGTCGGGC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 514 CTACAAGAAAGAAATTACTTGGTAAAGATTCCATCAGAAAGTCAAAACAGCAGCTCGGGC 573
Query 547 TTAAGAGCATGATGGTTTCTGGTATCAAACCATCTACTGATGGGCGGACTAATAGAGTGA 606
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 574 TTAAGAGCATGATGGTTTCTGGCATCAAACCATCTACTGATGGGCGGACTAATAGAGTGA 633
Query 607 CGTTTAACTTGACACCTGAGATAATTTTTCAGATTTTTGCTGAGAAGCCGGCTGTTCGGC 666
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 634 CGTTTAACTTGACACCTGAGATAATTTTTCAGATTTTTGCTGAGAAGCCAGCTGTTCGGC 693
Query 667 AGGCATTCATCAATTATGTTCCAAGTAAGATGACAGAAAAAGACTTCTGGACAAAATATT 726
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 694 AGGCATTCATCAATTATGTTCCGAGTAAGATGACAGAAAAAGACTTCTGGACAAAATATT 753
Query 727 TTAGAGCGGAATATCTCTACAGCACAAAAAATACAGCAGTAGCTGCAGCAGAAGCTGCTG 786
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 754 TTAGAGCAGAATATCTTTACAGCACCAAAAATACAGCAGTAGCTGCAGCAGAAGCTGCTG 813
Query 787 AGGACGAGGAACTCGCTGTCTTTCTGAAGCCTGATGAGATATTGGCTCGGGAAACTCGTC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AGGACGAGGAACTCGCTGTCTTTCTGAAGCCTGATGAGATATTGGCTCGGGAAACTCGTC 873
Query 847 AAAAGATTAGACGGGTTGATCCAACTCTTGACATGGAGGCTGACCAGGGAGACGACTACA 906
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ACAAGATTAGACGGGTTGATCCAACTCTTGACATGGAGGCTGACCAGGGAGACGACTACA 933
Query 907 CTCATCTTATGGACCACGGTATCCAGCGTGATGGCACCATGGATGTTGTTGAACCACAGA 966
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 934 CTCATCTTATGGACCACGGGATCCAGCGTGATGGCACCATGGATGTTGTTGAACCACAAA 993
Query 967 ATGATCAGTTTAGACGATCACTTTTGCAAGATCTTAATCGTCATGCTGCTGTTGTATTAG 1026
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 994 ATGATCAGTTTAAACGATCACTTTTGCAAGATCTTAATCGTCATGCTGCTGTTGTATTGG 1053
Query 1027 AAGGCAGAAGCATTGATGTTGAGTCAGAAGATACAAGGATTGTTGCAGAGGCTCTCACAC 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 AAGGCAGAAGCATTGATGTTGAGTCAGAAGATACAAGGATTGTTGCAGAGGCTCTCACAC 1113
Query 1087 GGGTGAAACAAGTAAGCAAAGCTGATGGCGAAACCACCAAGGACGCTAATCTGGAGAGAT 1146
|||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1114 GGGTTAAACAAGTAAGCAAAGCTGATGGTGAAACCACCAAGGACGCTAATCAGGAGAGAT 1173
Query 1147 TGGAGAGAATGTCCCGGTTGGCAGGAATGGAGGATCTTCAAGCACCACAAAACTTCCCGT 1206
|||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1174 TGGAAAGAATGTCCCGGGTAGCAGGAATGGAGGATCTTCAAGCACCACAAAATTTCCCAT 1233
Query 1207 TAGCGCCGCTTTCTATCAAGGATCCTCGTGATTACTTTGAATCTCAACAAGGAAACGTCC 1266
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 TGGCGCCGCTTTCTATCAAGGATCCTCGTGATTACTTTGAATCTCAACAAGGAAACGTCC 1293
Query 1267 TCAATGTACCCAGAGGAGCAAAGGGATTGAAGAGGAATGTCCATGAAGCTTATGGATTAT 1326
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1294 TCAATGTACCCAGAGGAGCAAAGGGCTTGAAGAGAAATGTCCATGAAGCTTATGGATTAC 1353
Query 1327 TAAAAGAATCCATTTTGGAGATTAGAGCTACAGGATTAAGTGATCCGTTGATTAGGCCTG 1386
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1354 TAAAGGAATCCATTTTAGAGATTAGAGCTACAGGATTAAGTGATCCGTTGATTAAGCCTG 1413
Query 1387 AAGTTTCCTTT-GAGGTTTTCAGTTCGTTAACCCGAACTATCT-CAACGGCCAAAAATAT 1444
||||||| ||| |||||||||||||||||||||||||| || | |||| || ||||||||
Sbjct 1414 AAGTTTC-TTTCGAGGTTTTCAGTTCGTTAACCCGAACCAT-TGCAACTGCTAAAAATAT 1471
Query 1445 TATTGGGAAGAACCCACGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGA 1504
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 TAATGGGAAGAACCCACGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGA 1531
Query 1505 AGTTCTACACCATTGGACATCAATACAAGAATTACTGAGACATTTTTGGTCATCTTATCC 1564
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1532 AGTTCTACACCATTGGACATCAATACAAGAATTACTGAAACATTTTTGGTCATCTTATCC 1591
Query 1565 GATAACAACCACATATCTTCATACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAACAC 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1592 GATAACAACCACATATCTTCATACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAATAC 1651
Query 1625 TTATTCAAAACTCGAGGCAATGAAAGAGTCGGTGCAATCTGATCTCCGGCATCAGGTTTC 1684
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1652 ATATTCAAAACTTGAGGCAATGAAAGAGTCGGTGCAATCTGATCTCCGGCATCAGGTTTC 1711
Query 1685 TCTACTGGTTCGTCCAATGCAACAGGCTCTTGACGCTGCGTTCCAACACTACGAAGCGGA 1744
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1712 TCTACTGGTTCGTCCAATGCAACAGGCTCTTGACGCTGCGTTCCATCACTACGAAGTGGA 1771
Query 1745 TCTGCAGAGAAGAACAGCTAAGAGCGGTGGCGAAAGACCAAACGGCTACATATAGAAGAC 1804
||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 1772 TCTGCAGAGAAGAACAGCTAAGAGCGG---CGAAAGACCAAACGGCTACGTATAGAGGAC 1828
Query 1805 AAAA 1808
||||
Sbjct 1829 AAAA 1832
> AT3G61420.1 | Symbols: | BSD domain (BTF2-like transcription
factors, Synapse-associated proteins and DOS2-like proteins)
| chr3:22727040-22731954 REVERSE LENGTH=2129
Length=2129
Score = 2239 bits (1212), Expect = 0.0
Identities = 1573/1747 (90%), Gaps = 25/1747 (1%)
Strand=Plus/Plus
Query 33 CAAGTGGAGAAGCGAGTCAAATACAAGAGCTCTGTCAAGGATCCTGGAACTCCTGGATTT 92
||| ||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||
Sbjct 193 CAA-TGGAGAAGCGAGTCAAATACAAGAGCTTTGTGAAGGATCCAGGAACTCTTGGATCC 251
Query 93 CTCAGAATT-AGAGAAGGGATGTTGCTCTTCGTCCCTAATGATCCCAAATCAGATTCAAA 151
||| ||||| || |||| |||| ||||||| ||||| |||||||| |||||||||| ||
Sbjct 252 CTC-GAATTAAGTGAAGTGATGCTGCTCTTTGTCCCAAATGATCCTAAATCAGATTTGAA 310
Query 152 GCTCAAAGTGCTCACCCAGAACATCAAAAGTCaaaaaaaTACAAAAGAAGGATCAAATAA 211
||| ||||| | || || |||||||||||||| ||| |||| |||||||||||||||||
Sbjct 311 GCTTAAAGTTCAGACTCACAACATCAAAAGTCAGAAATATACCAAAGAAGGATCAAATAA 370
Query 212 ACCTCCTTGGCTCAATCTGACCAACAAGCTGGGAAAGAGTCATATCTTTGAGTTTGAGAA 271
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||
Sbjct 371 ACCTCCTTGGCTCAATCTGACCAGCAAGCAGGGAAGGAGTCATATCTTTGAGTTTGAAAA 430
Query 272 TTATCCTGACATGCATGCTTGCCGTGATTTCATCACTAATGCCCTTGCTAAATGTGAAGA 331
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 431 TTATCCTGACATGCATGCTTGTCGTGATTTCATCACTAAGGCCCTTGCTAAATGTGAAGA 490
Query 332 GGAGCCTAATAAATC-CGTTGTCTCGACATCTTCCGAGCAACTCAGTAT-TAAGGAATTG 389
||||||||||||| | ||||||| |||| || | || ||||| ||||| | |||||
Sbjct 491 GGAGCCTAATAAA-CTAGTTGTCTTGACACCTGCTGAACAACTTAGTATGGCA-GAATTT 548
Query 390 GAGCTACGCTTCAAGCTTCTGAGAGAAAATAGTGAGCTGCAGAGATTACATAAGCAATTT 449
|||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||
Sbjct 549 GAGCTACGCTTCAAGCTTCTTCGAGAAAATAGTGAGTTGCAGAAATTGCATAAGCAATTT 608
Query 450 GTGGAAAGTAAAGTACTGGCGGAAGATGAATTCTGGGCTACAAGAAAGAAATTACTTGGT 509
|||||||||||||| ||| ||||||| ||||||||| |||| || |||||||||||||||
Sbjct 609 GTGGAAAGTAAAGTCCTGACGGAAGACGAATTCTGGTCTACGAGGAAGAAATTACTTGGT 668
Query 510 AAAGATTCCATCAGAAAGTCAAAACAGCAGGTCGGGCTTAAGAGCATGATGGTTTCTGGT 569
||||||||||| |||||||||||||| ||| | ||||| || |||||||||||||| ||
Sbjct 669 AAAGATTCCATTAGAAAGTCAAAACAACAGATGGGGCTCAAAAGCATGATGGTTTCAGGC 728
Query 570 ATCAAACCATCTACTGATGGGCGGACTAATAGAGTGACGTTTAACTTGACACCTGAGATA 629
|||||||| ||||||||||| ||||||||||| |||||||||||||| || ||||||||
Sbjct 729 ATCAAACCGTCTACTGATGGCCGGACTAATAGGGTGACGTTTAACTTAACGTCTGAGATA 788
Query 630 ATTTTTCAGATTTTTGCTGAGAAGCCGGCTGTTCGGCAGGCATTCATCAATTATGTTCC- 688
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 789 ATTTTTCAGATTTTTGCTGAGAAGCCGGCTGTTCGCCAGGCATTCATAAATTATGTTCCG 848
Query 689 AAGTAAGATGACAGAAAAAGACTTCTGGACAAAATATTTTAGAGCGGAATATCTCTACAG 748
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct 849 AA-AAAGATGACAGAAAAGGACTTTTGGACAAAATATTTTAGAGCAGAATATCTTTACAG 907
Query 749 CACAAAAAATACAGCAGTAGCTGCAGCAGAAGCTGCTGAGGACGAGGAACTCGCTGTCTT 808
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 908 CACAAAAAATACAGCAGTAGCTGCAGCAGAAGCTGCTGAGGATGAGGAACTCGCTGTCTT 967
Query 809 TCTGAAGCCTGATGAGATATTGGCTCGGGAAACTCGTCAAAAGATTAGACGGGTTGATCC 868
|||||||||||| ||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 968 TCTGAAGCCTGACGAGATATTGGCTCAGGAAGCTCGTCAAAAGATGAGACGGGTTGATCC 1027
Query 869 AACTCTTGACATGGAGGCTGACCAGGGAGACGACTACACTCATCTTATGGACCACGGTAT 928
||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||| ||
Sbjct 1028 AACTCTTGACATGGACGCTGACGAGGGAGATGACTACACCCATCTTATGGACCACGGGAT 1087
Query 929 CCAGCGTGATGGCACCA-TGGATGTTGTTGAACCACAGAATGATCAGTTTA-GACGATCA 986
|||||| |||||||||| || | || |||||||||||||||| ||| ||| || | |||
Sbjct 1088 CCAGCGCGATGGCACCAATG-ACATTATTGAACCACAGAATGACCAGCTTAAGAGG-TCA 1145
Query 987 CTTTTGCAAGATCTTAATCGTCATGCTGCTGTTGTATTAGAAGGCAGAAGCATTGATGTT 1046
||||| |||||||||||||||||||||||||||||||| ||||| ||| |||| |||||
Sbjct 1146 CTTTTACAAGATCTTAATCGTCATGCTGCTGTTGTATTGGAAGGAAGATGCATCAATGTT 1205
Query 1047 GAGTCAGAAGATACAAGGATTGTTGCAGAGGCTCTCACACGGGTGAAACAAGTAAGCAAA 1106
|||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1206 CAGTCTGAAGATACGAGAATTGTTGCAGAGGCTCTCACACGGGCGAAACAAGTAAGCAAA 1265
Query 1107 GCTGATGGCGAAACCACCAAGGACGCTAATCTGGAGAGATTGGAGAGAATGTCCCG-GTT 1165
|||||||| |||| ||||||||||||||||| |||||| ||||||||||||||||| |
Sbjct 1266 GCTGATGGTGAAATCACCAAGGACGCTAATCAGGAGAGGTTGGAGAGAATGTCCCGTGCA 1325
Query 1166 GGCAGGAATGGAGGATCTTCAAGCACCACAAAACTTCCCGTTAGCGCCGCTTTCTATCAA 1225
||| ||||||||||||||||||||||||||||||||| ||||| || || ||||||||
Sbjct 1326 A-CAGAAATGGAGGATCTTCAAGCACCACAAAACTTCCCATTAGCACCACTCTCTATCAA 1384
Query 1226 GGATCCTCGTGATTACTTTGAATCTCAACAAGGAAACGTCCTCAATGTACCCAGAGGAGC 1285
||| ||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 1385 GGACCCTCGTGATTACTTTGAATCTCAACAAGGAAACATCCTCAGTGAACCCAGAGGAGC 1444
Query 1286 AAAGG-GATTGAAGAGGAATGTCCATGAAGCTTATGGATTATTAAAAGAATCCATTTTGG 1344
||||| | | || || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1445 AAAGGCG-TCAAAAAGAAATGTCCATGAAGCTTATGGATTACTAAAAGAATCCATTTTGG 1503
Query 1345 AGATTAGAGCT-ACAGGATTAAGTGATCCGTTGATTAGGCCTGAAGTTTCCTTTGAGGTT 1403
||||||| | || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1504 TGATTAGAA-TGACGGGATTAAGTGATCCGTTGATTAAACCTGAAGTTTCCTTTGAGGTT 1562
Query 1404 TTCAGTTCGTTAACCCGAACTATCTCAACGGCCAAAAATATTATTGGGAAGAACCCACGA 1463
||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||| | |
Sbjct 1563 TTCAGTTCGTTGACCCGAACTATCTCAACTGCCAAAAATATTCTCGGGAAGAACCCGCAA 1622
Query 1464 GAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTCTACACCATTGGACA 1523
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 1623 GAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTATACATCACTGGACA 1682
Query 1524 TCAATACAAGAATTACTGAGACATTTTTGGTCATCTTATCCGATAACAACCACATATCTT 1583
||||||||||||||| |||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1683 TCAATACAAGAATTAGTGAGACATTTTTGGTCATCTTACCCAATAACAACGACATATCTT 1742
Query 1584 CA-TACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAACACTTATTCAAAACTCGAGGC 1642
| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 1743 -AGTACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAATACTTATTCACTACTCGATGC 1801
Query 1643 AATGAAAGAGTCGGTGCAATCTGATCTCCGGCATCAGGTTTCTCT-ACTGGTTCGTCCAA 1701
||||||| |||||||||| ||||||||||||||||| ||||| || ||| ||||||||||
Sbjct 1802 AATGAAACAGTCGGTGCAGTCTGATCTCCGGCATCAAGTTTC-CTTACTAGTTCGTCCAA 1860
Query 1702 TGCAACAGGCTCTTGACGCTGCGTTCCAACACTACGAAGCGGATCT-GCAGAGAAGAACA 1760
|||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||||
Sbjct 1861 TGCAACAGGCTCTTGATGCTGCGTTCCAACACTACGAATCGGA-CTTGCAGAGAAGAACC 1919
Query 1761 GCTAAGA 1767
|||||||
Sbjct 1920 GCTAAGA 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90059777730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5