BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924095
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55760.1 | Symbols: | BTB/POZ domain-containing protein | c... 1644 0.0
> AT1G55760.1 | Symbols: | BTB/POZ domain-containing protein |
chr1:20846908-20849054 REVERSE LENGTH=1746
Length=1746
Score = 1644 bits (890), Expect = 0.0
Identities = 986/1033 (95%), Gaps = 4/1033 (0%)
Strand=Plus/Plus
Query 1 CGGCTTTGGCTTTTGCTAGGATGACTGATTCTGCTTACAGAGTAGACACCATTTCCAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 528 CGGCTTTGGCTTTTGCTAGGATGACTGATTCTGCTTACAGAGTAGACACCATTTCTAGAC 587
Query 61 TCGCCCAATGGCGAATCCACAATCTTTCTTCCTCCACTTACCGCAAGTCCGATCCTTTCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TCGCCCAATGGCGAATCCACAATCTTTCTTCCTCCACTTACCGCAAGTCCGATCCTTTCA 647
Query 121 AGATGGGTCTTTGGAATTGGCACTTGTCTGTAGAGAAAAGCAAGATGCTATTAAATGTTA 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 648 AGATGGGTCTTTGGAATTGGCACTTGTCTGTGGAGAAAAGCAAGATGCTATTAAATGTTA 707
Query 181 AGTTGTATCCAGAGGTATCCAACCTTACCAGAGAAAATCCACCAGTTGCTTCCTTTGTTC 240
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 708 AGTTGTATCCAGAGGTATCAAACCTTACCAGAGAAAATCCACCGGTTGCTTCCTTTGCTC 767
Query 241 TTCGTGTTGTCTCTTCTGCTGGTGATAGGAAAG-CTTTATCTCATCCAGAAGTAATAGAT 299
||||||||||||||||| ||||||| || |||| || |||||||||||||||||||||||
Sbjct 768 TTCGTGTTGTCTCTTCTACTGGTGAGAG-AAAGGCTCTATCTCATCCAGAAGTAATAGAT 826
Query 300 AAGCGAATTAAGACAAACGAAGATTTTATTTGGACTATTGAAGTTCCCTTAACTGGGAAA 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 AAGCGGATTAAGACAAACGAAGATTTTATTTGGACTATTGAAGTTCCCTTAACTGGGAAA 886
Query 360 ATCATCATCGACGTCGAGTTTCTTGACTTGAAGGTTCTGTCTCAAGATAGTGGAGAAATT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 887 ATCATCATCGACGTCGAGTTTCTTGACTTGAAGGTTTTGTCTCAAGATAGTGGAGAACTT 946
Query 420 TACTCTATCTGGGC-AGACGGTTCAACCGAGAATCAATCGAAAGGGACAGCGGTAACATC 478
|||||||||||||| | |||||||||| |||||||||||| ||| || |||||||||||
Sbjct 947 TACTCTATCTGGGCCA-ACGGTTCAACTGAGAATCAATCGCAAGTAACTGCGGTAACATC 1005
Query 479 CCTTGGACGTATGTTGACAGAAAGCATTTACACTGACATAATGATCAATGCTTCGGGTGG 538
||||||||||||||||||||||||||||||||| ||||||| ||||||||| || | |||
Sbjct 1006 CCTTGGACGTATGTTGACAGAAAGCATTTACACCGACATAACGATCAATGCCTCTGATGG 1065
Query 539 AAGCATTGGAGCTCACCGAGCTGTTCTTGCTGCCCGTTCACCTGTTTTCCGCAGCATGTT 598
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1066 AAGCATTGGAGCTCACCGAGCAGTTCTCGCTGCCCGTTCACCTGTTTTCCGCAGCATGTT 1125
Query 599 TTTACACGACCTGAAAGAGAAAGAACTATCAGAAATAAACATACTCGACATGCCACTTGA 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1126 TTTACACGACCTGAAAGAGAAAGAACTATCAGAAATAAACGTACTCGACATGCCACTTGA 1185
Query 659 TGCTTGCCAAGCTTTTCTGAGTTATATCTACGGCAATATCCAGAACGAAGACTTTCTTAT 718
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1186 TGCTTGCCAAGCTTTTCTCAGTTATATCTACGGCAATATCCAAAACGAAGACTTTCTTAT 1245
Query 719 ACACAGATTGGCACTCCTCCAAGCAGCTGAAAAATATGATATTGCTGATTTAAAAGACGC 778
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1246 ACACAGATTGGCACTCCTCCAAGCAGCTGAGAAATATGATATTGCTGATTTAAAAGAGGC 1305
Query 779 ATGCCACTTGAGCCTTCTAGACGACATCGACACGAAGAATGTGCTTGAGAGGCTACAAAA 838
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 1306 GTGCCACTTGAGTCTTCTAGACGATATCGACACAAAGAATGTGCTTGAGAGGCTACAGAA 1365
Query 839 TGCTTATCTCTATCAATTACCTGAACTGAAGGCTAGCTGCATGAGGTATCTTGTGAAGTT 898
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1366 TGCTTATCTCTATCAATTACCTGAACTGAAGGCTAGCTGCATGAGATATCTTGTGAAGTT 1425
Query 899 TGGTAAGATATTTGAAATCCGCGATGAGTTCAACATATTCATGCAATGCGCAGACAGAGA 958
||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1426 TGGCAAAATATTTGAGATCCGAGACGAGTTCAACATATTCATGCAATGCGCAGACAGAGA 1485
Query 959 TTTGATTTCTGAAGTCTTCCACGAAGTCCTCGGTACCTGGAAAGGATTTTAGAGGAAATC 1018
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1486 TTTGATTTCTGAAATCTTCCACGAAGTCCTCAGTACCTGGAAAGGATTTTAGGGGAAATC 1545
Query 1019 AGAATGGGTATGT 1031
|||| ||||||||
Sbjct 1546 AGAAAGGGTATGT 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5