BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924096

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G55770.1 | Symbols:  | Plant invertase/pectin methylesterase...   776    0.0  


> AT1G55770.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:20851039-20851566 REVERSE 
LENGTH=528
Length=528

 Score =  776 bits (420),  Expect = 0.0
 Identities = 497/533 (93%), Gaps = 10/533 (2%)
 Strand=Plus/Plus

Query  21   ATGAAGCAATTC-GCCGGAGTCCTCTTCCTTTGCATCGTTCTTC-TCTCCTTCGTCGCCG  78
            ||||||||| || |||||||| |||||||| |||||||||| || ||||||||||| |||
Sbjct  1    ATGAAGCAA-TCAGCCGGAGTTCTCTTCCTCTGCATCGTTC-TCATCTCCTTCGTCACCG  58

Query  79   GAAATGCTAATTCCGGTATGATATCCGATCTCTGCAAACACTCCGACGATCCAAAACTCT  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  59   GAAATGCTAATTCCGGTATGATATCCGATCTCTGCAAACACTCCGACGATCCAAACCTCT  118

Query  139  GTCTCTCCAGCATAACTTCACGTCCCGAGTCCGGCGAATTCGCAGGCACCAGCAGCCAGA  198
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  119  GTCTCTCCAGCATAACTTCACGTCCCGAGTCCGGCGAATTCGCAGGCACCAGCAACCAGA  178

Query  199  TCGAGATCATAGCTATCTCCGCGGCGTCAGCCAACGCCTCCGCCACTTCCTCCTATATCA  258
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct  179  TCGAGATCATAGCTATCTCCGCCGCATCAGCCAACGCCTCCGCCACTTCCTCCTACATCA  238

Query  259  AGA-AAAAGCTCAGCAACGAAGATTTGGAGCCGGCGATTGAAGACACGCTTGAGGACTGT  317
            | | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  239  A-ACAAAAGCTCAGCAACGAAGATTTGGAGCCGGCTATTGAGGACACGCTTGAGGACTGT  297

Query  318  CAGAA-GAATTACCAAGATGCTGTGGAGCAGCTTGACGACTCGATCTCGGCCATGCTCGC  376
            ||||| || |||||||||||| ||||||||||| || ||||||||||| |||||||||||
Sbjct  298  CAGAAAGA-TTACCAAGATGCCGTGGAGCAGCTAGATGACTCGATCTCCGCCATGCTCGC  356

Query  377  AGACGCACACGCTGATGTCGACGTCTGGCTGAGAGCGGCGATCAGCGCTATCGAGTCTTG  436
            |||||||||| | || ||||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct  357  AGACGCACACACCGACGTCGATGTCTGGCTGAGCGCGGCGATCAGCGCCATCGAGTCATG  416

Query  437  TGGAAGCGCGTTGGATTCACGCGCCGGGAACGATGCAGAGCTTTCCCAGAGGAAC-AAGG  495
            ||||||||| |||| ||||||||| ||||| ||||| |||||||||||||||||| ||| 
Sbjct  417  TGGAAGCGCATTGGGTTCACGCGCTGGGAATGATGCTGAGCTTTCCCAGAGGAACGAAG-  475

Query  496  TCTTTCTCAAGCTGTGCAAAAACGCTTTGATGATTAACAAAATGTTAACTTGA  548
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  476  TCTTTCTCAAGCTGTGCAAAAACGCTTTGATGATTAACAAAATGTTAACTTGA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5