BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924098
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55790.1 | Symbols: | Domain of unknown function (DUF2431) ... 1221 0.0
AT1G55800.1 | Symbols: | Domain of unknown function (DUF2431) ... 274 2e-72
> AT1G55790.1 | Symbols: | Domain of unknown function (DUF2431)
| chr1:20852324-20856122 REVERSE LENGTH=1769
Length=1769
Score = 1221 bits (661), Expect = 0.0
Identities = 788/846 (93%), Gaps = 21/846 (2%)
Strand=Plus/Plus
Query 34 aaaaCAAAACTTTCCAAAGTTCCATCCTTTATCGCTCCAATGGCGATGAGAGAGTTCTCG 93
|||| ||||| ||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 15 AAAATAAAACCTTCCAAAGTAGCATCCTTTATCGCTGCAATGGCGATGAGAGAGCTCTCG 74
Query 94 AAGCTTACCAGCAGAGCAAGAGACAATGATGAAGAAGAAGAAGTATGGGTCAAACACTAT 153
|||||| ||| ||| | || ||| | | || ||||||||||||||||||||||||
Sbjct 75 CAGCTTAACAG-AGA-C-AGCGAC---G--G-TGATGAAGAAGTATGGGTCAAACACTAT 125
Query 154 TCATCGAACCATCAGATACTTCTCGTCGGCGAAGGAGATTTCTCATTCTCTCACAGCTTA 213
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCATCCAACCATCAGATACTTCTCGTCGGCGAAGGAGATTTCTCATTCTCTCACAGCTTA 185
Query 214 GCCACTCTCTTCGGCTCTGCTTCCAATATCTGCGCTTCCTCTCTCGATTCATACGATGTT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GCCACTCTCTTCGGCTCTGCTTCCAATATCTGCGCTTCCTCTCTCGATTCATACGATGTT 245
Query 274 GTGGTTAGAAAGTACAAGAAGGCAAGATCAAACATTGAAACTTTGAAGAGACTTGGAGCT 333
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 246 GTGGTTAGAAAGTACAAGAAGGCAAGATCAAACCTTAAAACTTTGAAGAGACTTGGAGCT 305
Query 334 TTACTTTTACATGGAGTTGATGCAACCACACTGCATTTTCATCCTGATCTTCGTTATAGA 393
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 306 TTACTTTTACATGGAGTTGATGCTACCACACTGCATTTTCACCCTGACCTTCGTTATAGA 365
Query 394 AGATTTGATCGTGTCATCTTCAACTTCCCGCACGCCGGTTTCCACGGCAGAGAGTCTGAT 453
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 366 AGATTTGATCGCGTCATCTTCAACTTCCCTCACGCCGGTTTCCACGGCAGAGAGTCTGAT 425
Query 454 TCCTCTCTTATACGGAAGCATAGAGAACTGGTGTTTGGATTTTTCAATGGTGCAAGCCGT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TCCTCTCTTATACGGAAGCATAGAGAACTGGTGTTTGGATTTTTCAATGGTGCAAGCCGT 485
Query 514 TTGCTAAGAGCCGATGGGGAAGTTCATGTTTCTCACAAGAACAAAGCACCTTTTTGTAAC 573
||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 486 TTGCTAAGAGCTAATGGGGAAGTTCATGTCTCTCACAAGAACAAAGCACCTTTTTCTGAG 545
Query 574 TGGAATCTCGAGGAGCTCGCTAGCAGATGCTTTCTTGTGTTGATTCAACGTGTGGCGTTC 633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 546 TGGAATCTCGAGGAGCTCGCTAGCAGATGCTTTCTTGTGTTGATTCAACGTGTGGCCTTC 605
Query 634 GAGAAGAGCAATTACCCTGGTTATGAGAATAAGAGAGGAGATGGGTC-TAGATGTGAC-A 691
||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 606 GAGAAGAACAATTACCCTGGTTATGAGAATAAGAGAGGAGATGGG-CGTAGATGTGACCA 664
Query 692 AGCCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCTCGTGTCGCTAAGG 751
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 A-CCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCTCGTGTCGCTAAGG 723
Query 752 AACTTTATGCAGAGAAGGTAAAATCGAGAGAAGTGAAGGAACAAGAATCAAGTTGTGCCC 811
|||||||||||||||| || | |||||||||||||||||||| |||||||| | || ||
Sbjct 724 AACTTTATGCAGAGAAAGTGAGATCGAGAGAAGTGAAGGAACGAGAATCAA-T-GTATCC 781
Query 812 --AAGCT-TTTATAAATACA-CAGCCAGTGTCATTTGATCATGGGTATCCCCTCCAAACA 867
||||| ||| |||| | | ||||||||||||||||| ||| |||||| ||||||||||
Sbjct 782 GGAAGCTATTT-TAAACA-AGCAGCCAGTGTCATTTGACCATAGGTATCGCCTCCAAACA 839
Query 868 GAATTT 873
||||||
Sbjct 840 GAATTT 845
Score = 213 bits (115), Expect = 4e-54
Identities = 147/163 (90%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 1219 TTTCCTCATCTGTACGTTGGAGAATCGCCAGAAAGACGCCACCTGCTTTGTCAAGACTTT 1278
|||||||||||||||| |||||| |||||||| |||| | |||||||||||||||||||
Sbjct 974 TTTCCTCATCTGTACGCTGGAGAGTCGCCAGAGAGACATCGCCTGCTTTGTCAAGACTTT 1033
Query 1279 CCAGTTCAAGCTAGTCAAGAACCACCATTTGGATGCTCTAACCGCTTTAGTGGAGTTTCT 1338
||||||||||||||||||||||||| || | || ||||||||||| ||||||||||||
Sbjct 1034 CCAGTTCAAGCTAGTCAAGAACCACTATCCGAATACTCTAACCGCTGGAGTGGAGTTTCT 1093
Query 1339 CATGAAATTTATAACTGGGAAGTACCAAGAATGTTAACAAGTA 1381
| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1094 CGTGAAATTTATAACTGGGAAGTACGAAGAATGTCAACAAGTA 1136
Score = 185 bits (100), Expect = 9e-46
Identities = 121/131 (92%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 910 AGCTATCGTGGGGACTATAACCTTAGGCAAGTCCAAGATCCTTTGGTTCAA-TCAAGAGA 968
|||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 848 AGCTATCGCGGGGACTATAACCTTAGGCAAGTCCAAGATCCTCTGGTT-AAGTCAAGAGA 906
Query 969 AAGGACATCTCCATTGGATCTTTGTTATTACCAAGAACGTAGACGTTTACAGTTCGAAAA 1028
||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
Sbjct 907 AAGGACATCTCCATTGGATCTTTGTTACTACCAAGAACGTAGATGTTTACAGCTCGAAGA 966
Query 1029 TGCCCGGTTTC 1039
| |||| ||||
Sbjct 967 TTCCCGTTTTC 977
> AT1G55800.1 | Symbols: | Domain of unknown function (DUF2431)
| chr1:20856922-20858235 REVERSE LENGTH=945
Length=945
Score = 274 bits (148), Expect = 2e-72
Identities = 178/192 (93%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 268 GATGTTGTGGTTAGAAAGTACAAGAAGGCAAGATCAAA-CATTGAAACTTTGAAGAGACT 326
|||| |||||||||||| |||||||| ||||||||||| | ||||||| |||||||||||
Sbjct 262 GATGATGTGGTTAGAAAATACAAGAATGCAAGATCAAATC-TTGAAACATTGAAGAGACT 320
Query 327 TGGAGCTTTACTTTTACATGGAGTTGATGCAACCACACTGCATTTTCATCCTGATCTTCG 386
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 321 TGGAGCTTTCCTTTTACATGGAGTTGATGCTACCACACTGCATTTTCATCCTGATCTTCG 380
Query 387 TTATAGAAGATTTGATCGTGTCATCTTCAACTTCCCGCACGCCGGTTTCCAC-GGCAGAG 445
|||||||||||| ||||||||||||||||||||||||||| ||||||||||| || | ||
Sbjct 381 TTATAGAAGATTCGATCGTGTCATCTTCAACTTCCCGCACACCGGTTTCCACAGGAA-AG 439
Query 446 AGTCTGATTCCT 457
|||||||| |||
Sbjct 440 AGTCTGATCCCT 451
Score = 241 bits (130), Expect = 2e-62
Identities = 145/152 (95%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 620 AACGTGTGGCGTTCGAGAAGAGCAATTACCCTGGTTATGAGAATAAGAGAGGAGATGGGT 679
||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 539 AACTTGAGGCGTTCGAGAAGAGAAACTACCCTGGTTATGAGAATAAGAGAGGAGATGGGT 598
Query 680 CTAGATGTGA-CAAGCCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCT 738
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTAGATGTGACCAA-CCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCT 657
Query 739 CGTGTCGCTAAGGAACTTTATGCAGAGAAGGT 770
|||||||| |||||||||||||||||||||||
Sbjct 658 CGTGTCGCCAAGGAACTTTATGCAGAGAAGGT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5