BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924105
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55840.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 1622 0.0
> AT1G55840.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:20873602-20876272 FORWARD LENGTH=1521
Length=1521
Score = 1622 bits (878), Expect = 0.0
Identities = 975/1022 (95%), Gaps = 6/1022 (1%)
Strand=Plus/Plus
Query 1 GAGATCTCTAGAGAGAGAAAATGAGCATCACTAATGAAGAAGCAGTGAAGCAATTACGTG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 270 GAGATCTCTAGAGTGAGAAAATGAGCATCACTAATGAAGAAGCAGTGAAGCAATTGCGTG 329
Query 61 CTTTAATGGAAGACGTTGATGATTCACTGAGAGAGTCGTATCGGAACATTCATCAAGGGT 120
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 330 CTTTAATGGAAGATGTTGATGATTCACTCAGAGAGTCGTATCGGAACATTCATCAAGGGT 389
Query 121 ATACGACAGAGACTTTGTCACGCTTTCTTAAAGCGAGGGATTGGAATGTTCAGAAAGCTC 180
|| ||||||||| ||||| ||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 390 ATCCGACAGAGAATTTGTTACGCTTTCTTAAAGCCAGGGATGGGAATGTCCAGAAAGCTC 449
Query 181 ATAAAATGTTGCTCGAGTGTTTAGAATGGAGGACTCAAAACGAGATTGATAAGATACTAA 240
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 450 ATAAAATGTTGCTCGAGTGTTTGGAATGGAGGACTCAAAACGAGATTGACAAGATACTAA 509
Query 241 CAAAACCTATTGTTCCTGTTGACCTGTATAGAGCAATCAGAGACACACAACTTGTCGGTG 300
| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 510 CTAAACCCATTGTTCCTGTTGACCTGTACAGAGGAATCAGAGACACACAACTTGTCGGTG 569
Query 301 TGTCTGGTTACTCTAAAGAGGGTCTCCCTGTCATTGCCATTGGTGTGGGGCTTAGCACAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TGTCTGGTTACTCTAAAGAGGGTCTCCCTGTCATTGCCATTGGTGTGGGGCTTAGCACAT 629
Query 361 ATGACAAGGCCTCCGTTCACTACTATATACAGTCTCACATTCAAATGAATGAGTACCGGG 420
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 630 ATGATAAAGCCTCCGTTCACTACTATGTACAGTCTCACATTCAAATGAATGAGTACCGGG 689
Query 421 ATCGTGTAGTATTGCCATCTGCTACTAAGAAACAGGGACGACCAATTTGTACTTGTTTGA 480
||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 690 ATCGTGTTGTATTGCCATCTGCTTCAAAGAAACAGGGACGACCAATTTGCACTTGTTTGA 749
Query 481 AAATTTTGGATATGTCTGGTTTAAAGCTTTCAGCTTTAAGTCAAATTAAGTTAATGACTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 AAATTTTGGATATGTCTGGTTTAAAGCTTTCAGCTTTAAGTCAAATTAAGTTAATGACTG 809
Query 541 CTATAACCACAATAGATGATTTAAACTATCCAGAGAAGACGGAGACATATTATGTTGTCA 600
||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 810 CTATAACAACAATAGATGATTTGAACTATCCAGAGAAGACAGAGACATACTATGTTGTCA 869
Query 601 ATGTCCCGTACATATTCTCTGCTTGTTGGAAAACCATAAAGCCTCTGTTGCAAGAGAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 ATGTCCCGTACATATTCTCTGCTTGTTGGAAAACCATAAAGCCTCTGTTGCAAGAGAGAA 929
Query 661 CAAAGAAGAAGATTCAAGTGCTCAAAGGTTGTGGGAAAGATGAGTTGCTAAAGATAATGG 720
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 930 CAAAGAAGAAGATTCAAGTTCTGAAAGGTTGCGGGAAAGATGAGTTGCTAAAGATAATGG 989
Query 721 ACTATGAGTCTCTCCCACATTTCTGCAGAAGAGAAGGGTCTGGATCTGGTAGGCATAT-T 779
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 990 ACTATGAGTCTCTCCCACATTTCTGTAGAAGAGAAGGGTCTGGATCTGGTAGGCATATCT 1049
Query 780 ACAAATGGAACAGTAGACAATTGTTTCTCTTTGGATCACTCTTTCCACCAAGACCTTTAC 839
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1050 -CAAATGGAACAGTAGACAATTGTTTCTCTCTGGATCACTCTTTCCACCAAGACCTTTAT 1108
Query 840 GATTATGTCAAGCAACAGGCTCTTGTTAAAGGATCAAGTGCACCGATCAGACATGGTTCA 899
|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1109 GATTATGTCAAGCAGCAGGCTCTGGTTAAAGGATCAGGTGCACCGATCAGACATGGTTCA 1168
Query 900 GTCCACGTTAAGTTCCCTGAGCCAGATACCGAAGGCAACAAGATCTTCGATACCTTAGAA 959
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1169 GTCCACGTTAAGTTCCCTGAGCCAGACACCGAAGGCAACAAGATCTTCGATACCTTAGAA 1228
Query 960 ACTGAGTTCCAGAAGCTTGGAAATGACCAAAAGATCTGATT--TCTTCA-CGCCTTATAA 1016
| ||||||||||||||||||||||||||| ||||||||| | ||| || | ||||||||
Sbjct 1229 AATGAGTTCCAGAAGCTTGGAAATGACCAGAAGATCTGAGTGATCTACAAC-CCTTATAA 1287
Query 1017 CA 1018
||
Sbjct 1288 CA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5