BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924111
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55880.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzy... 2134 0.0
> AT1G55880.1 | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme
family protein | chr1:20898898-20901183 REVERSE LENGTH=1703
Length=1703
Score = 2134 bits (1155), Expect = 0.0
Identities = 1261/1312 (96%), Gaps = 7/1312 (1%)
Strand=Plus/Plus
Query 1 GGAGAAGACGAGCTT-AGCTTCAATGGCGCCTGTTAATATGACTGGCGCTGTTGTTGCAG 59
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 GGAGAAGGCGAGCTTGAGCTTCAATGGCGCCTGTTAATATGACTGGCGCTGTTGTTGCAG 80
Query 60 CGGCGGCGTTGCTGATGCTTTCTTCTTACAG--T-TTCTTCCGTCTCTCCGAGAAGAAGA 116
| ||||||||| |||||||| |||||||||| | || |||||||||||| | ||||||
Sbjct 81 CAGCGGCGTTGTTGATGCTTACTTCTTACAGCTTCTTTTTCCGTCTCTCC--G-AGAAGA 137
Query 117 AGAAGAGGAAGGACAAGTTGAGTATGAGAAACGGGCTTGTTGATGCCATTGGCAATACTC 176
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 138 AGAAGAGGAAGGAGAAGTTGACTATGAGAAACGGGCTTGTTGATGCCATTGGCAATACTC 197
Query 177 CTCTGATTCGTATCATTAGCCTCTCTGAGGCTACTGGATGTGAGATTCTTGGGAAATGCG 236
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTCTGATTCGTATCAATAGTCTCTCTGAGGCTACTGGATGTGAGATTCTTGGGAAATGCG 257
Query 237 AGTTTTTGAATCCAGGAGGTAGTGTTAAAGATAGAGTTGCTGTGAAGATCATTCAAGAGG 296
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 258 AGTTTTTGAATCCAGGAGGTAGTGTTAAAGATAGAGTTGCTGTCAAGATCATTCAAGAGG 317
Query 297 CTTTGGAATCTGGTAAGCTATTCCCGGGAGGAATTGTAACTGAGGGTAGTGCAGGAAGTA 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 318 CTTTGGAATCTGGTAAGCTATTCCCTGGAGGAATTGTAACTGAGGGTAGTGCAGGAAGTA 377
Query 357 CTGCCATTAGCCTTGCTACAGTTGCTCCGGCGTACGGGTGTAAATGTCATGTTGTTATAC 416
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 378 CTGCCATTAGCCTTGCTACAGTTGCTCCGGCTTATGGGTGTAAATGTCATGTTGTTATAC 437
Query 417 CTGATGATGCTGCTATTGAAAAGTCTCAAATAATTGAAGCCCTTGGAGCTACTGTTGAGA 476
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 438 CTGATGATGCTGCTATTGAAAAGTCTCAAATAATTGAAGCCCTTGGAGCTTCTGTTGAGA 497
Query 477 GAGTGAGGCCAGTGTCAATAACTCACAAAGATCATTATGTCAACATTGCGAGGCGACGTG 536
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 498 GAGTGAGGCCAGTGTCAATAACTCACAAGGATCACTATGTCAACATTGCGAGGCGACGGG 557
Query 537 CTGATGAAGCAAACGAGTTAGCATCAAAGAGAAGACTAGGGAGCAAAACAAATGGCATAC 596
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 558 CTGACGAAGCAAACGAGTTAGCATCAAAGAGAAGACTAGGGAGCGAAACAAATGGCATAC 617
Query 597 ACCAGGAGAAAACTAATGGCTGCACGGTTGAGGAAGAGAAAGAGTCTTCCTTATTCTCAG 656
||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||
Sbjct 618 ACCAGGAGAAAACTAATGGTTGCACGGTTGAGGAAGTGAAAGAGCCTTCCTTATTCTCAG 677
Query 657 ATTCAGTTACAGGTGGCTTCTTTGCAGATCAATTTGAAAACTTGGCAAATTATAGGGCTC 716
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ATTCAGTTACCGGTGGCTTCTTTGCAGATCAATTTGAAAACTTGGCAAATTATAGGGCTC 737
Query 717 ATTATGAAGGTACTGGCCCTGAAATCTGGCACCAGACTCAGGGTAACATTGACGCCTTTG 776
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 738 ATTATGAAGGTACTGGCCCTGAAATCTGGCACCAGACTCAGGGTAATATTGACGCCTTTG 797
Query 777 TTGCTGCTGCGGGGACAGGCGGTACTTTAGCTGGCGTTTCAAGGTTTCTTCAGGACAAGA 836
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 798 TTGCTGCTGCGGGTACAGGCGGGACTTTAGCTGGTGTTTCAAGGTTTCTTCAGGATAAGA 857
Query 837 ATGAAAGAGTTAAATGCTTTCTGATTGATCCTCCTGGATCTGGTCTGTACAATAAAGTAA 896
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 ATGAAAGAGTTAAATGTTTTCTGATTGATCCTCCTGGATCTGGTCTGTACAATAAAGTAA 917
Query 897 CACGGGGAGTGATGTATACAAGAGAAGAAGCTGAAGGGCGTCGACTAAAGAACCCATTTG 956
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 918 CACGGGGAGTGATGTACACAAGAGAAGAAGCTGAAGGGCGTCGGCTAAAGAACCCATTTG 977
Query 957 ATACAATAACAGAAGGGATCGGAATCAACAGGCTTACTAAAAACTTCCTGATGGCAAAAC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 ATACAATAACAGAAGGGATCGGAATCAACAGGCTTACTAAAAACTTCCTGATGGCAAAAC 1037
Query 1017 TTGATGGTGGTTTTCGTGGCACTGACAAAGAAGCGGTTGAGATGTCGAGGTTTCTTCTGA 1076
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1038 TTGACGGTGGTTTTCGTGGGACTGATAAAGAAGCGGTTGAGATGTCGAGGTTTCTTCTGA 1097
Query 1077 AAAATGATGGGCTCTTTGTTGGAAGCTCCTCGGCTATGAACTGTGTTGGGGCAGTGAGGG 1136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1098 AGAATGATGGGCTCTTTGTTGGAAGCTCCTCGGCTATGAACTGTGTTGGGGCAGTAAGGG 1157
Query 1137 TGGCTCAAACCCTTGGTCCTGGTCACACAATTGTCACCATTCTTTGTGATAGCGGAATGC 1196
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TGGCTCAGACCCTTGGTCCTGGTCACACAATTGTCACCATTCTTTGTGATAGCGGAATGA 1217
Query 1197 GACATCTAAGTAAGTTTCACGACCCTAAGTACTTGGATCTATACGGGTTGAGTCCAACCG 1256
|||||||||| |||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1218 GACATCTAAGCAAGTTTCACGACCCTAAGTACTTGAATTTATACGGGTTAAGTCCAACCG 1277
Query 1257 CTATCGGATTAGAGTTCCTCGGCATAAAGTGAAACTACCTATCTGTTACAAT 1308
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1278 CTATCGGATTAGAGTTCCTCGGCATAAAGTGAAACTACAAATCTGTTACAAT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5