BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924117
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02770.1 | Symbols: | 4'-phosphopantetheinyl transferase su... 483 2e-135
AT4G00920.1 | Symbols: | COP1-interacting protein-related | ch... 337 1e-91
AT1G30060.1 | Symbols: | COP1-interacting protein-related | ch... 231 7e-60
> AT2G02770.1 | Symbols: | 4'-phosphopantetheinyl transferase
superfamily | chr2:775482-779786 REVERSE LENGTH=2161
Length=2161
Score = 483 bits (261), Expect = 2e-135
Identities = 498/607 (82%), Gaps = 38/607 (6%)
Strand=Plus/Plus
Query 83 TATTGATACTCGTCTGGGACTTCTCCTTGAC-AGTGATGATAGTGTATCTGCTTTCAGAG 141
||| |||||||||||||| |||||| | ||| || ||||||| ||||||| | |||| ||
Sbjct 42 TATGGATACTCGTCTGGGCCTTCTCATGGACAAG-GATGATACTGTATCTACATTCAAAG 100
Query 142 AAAAAATCTGCAAGGAACATGAACAGTGTTTCCCAAGTGTTGGAAGCATTACTGTCTCTG 201
| ||||||||||| || ||||||||||||||||| ||| |||||| ||| ||| |||| |
Sbjct 101 AGAAAATCTGCAAAGAGCATGAACAGTGTTTCCCTAGTTTTGGAAACATCACTATCTCCG 160
Query 202 CTTTGAAGGTTAAATATGGTGGTCAATTTTATCACGTGGCTGATT-TAATGATTTTGAAC 260
||||||||||||| | | | |||||| ||||||| | | ||||| | ||| |||||||
Sbjct 161 CTTTGAAGGTTAACTGTTGCGGTCAACTTTATCATTTAGTTGATTCT-CTGACTTTGAAC 219
Query 261 AATGTTTTCCAAAGCATAAGTGACAACCACTCGTTTCTATTTGTTGATGT-CTTGAGGGT 319
| | |||||||||| | || | | |||||||| ||||||||||| | |||||||
Sbjct 220 ACGGCTTTCCAAAGC---A---ACGA--A-TCGTTTCTTTTTGTTGATGTGC-TGAGGGT 269
Query 320 TGAGGAGAAGGGTATTATGCTGACTGGA-AAAGCTTCTTTTTCAAGCCCTAAG-CTACTT 377
|||||||||||||| |||||||||||| ||| || |||| |||| |||| || |||||
Sbjct 270 TGAGGAGAAGGGTAAAATGCTGACTGGAGAAA-CTCCTTTGTCAAACCCT-AGTTTACTT 327
Query 378 GAGATAGAGACCAATGATATGACGGTTAAGGAAGCTCCGGTAACCCAAGCTGGTGATAAG 437
|||| ||||||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct 328 GAGAGAGAGACCAATGATCTGACTATTAAGGAAGCTCCGGTAACCCAAGCTGGTGATGAT 387
Query 438 AAAAGTAGAAAGAGGAAACAT-AAAACTTTAGATAGCGCGCATGCCAACCAAAGTCGTAA 496
|||| || ||||||||||| | |||| ||| ||||| | || || || ||| |||
Sbjct 388 AAAACTAAAAAGAGGAAAC-TGAAAAGTTTGGATAGTAC-CAA---AAG-AA-GTCATAA 440
Query 497 GAAATGCTCTCTTGGTGACCAGTCAAGTGGTAAAGGAGAGGTTCCAA-CT--GG-AA--- 549
|||| | |||||||| || ||||||||||| |||||||||||| | || || ||
Sbjct 441 GAAACGATCTCTTGGGGATCAGTCAAGTGGAAAAGGAGAGGTTG-AGTCTTTGGCAATGT 499
Query 550 CA--AT-AGGCAAAGACCTTGAAAAGGGAGAAAAAAGTGCTGCTACGGTTGACCAAGAGA 606
|| | ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 500 CACCAACAGGAAAAGATCTTGAAAAGGGAGAAAAAAGTGCTGCTACGATTGACCAAGAGA 559
Query 607 AGGATCTTGCACTTGTGGATGATGAGAACGAGAGTCACAAAGATGATGTTTGTTTAGGAG 666
| ||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||
Sbjct 560 ATGATCTTGCACTTGTGGATGATGAGAACGAGAGTCATGAAGAAGATGTTCGTGTAGGAG 619
Query 667 CAATAGT 673
|||||||
Sbjct 620 CAATAGT 626
Score = 113 bits (61), Expect = 3e-24
Identities = 70/74 (95%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 833 TGGAAAAGATGCTGATGAGGCTACTACATCTGTGAAGGTTGCTAAGAAAGGAAGGGCAAA 892
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 729 TGGAAAATATGCTGATGAGGCTACTACATCTGTGAAGGCTGCTAAGAAAGGAAGGACAAA 788
Query 893 GAAAGACAAG-CAG 905
|||||||||| |||
Sbjct 789 GAAAGACAAGGCAG 802
> AT4G00920.1 | Symbols: | COP1-interacting protein-related |
chr4:393767-395382 FORWARD LENGTH=945
Length=945
Score = 337 bits (182), Expect = 1e-91
Identities = 579/753 (77%), Gaps = 98/753 (13%)
Strand=Plus/Plus
Query 90 ACTCGTCTGGGAC-TTCTCCTTGACAGTGATGATAGTGTATCTGCTTTCAGAGAAAAAAT 148
||||||||||| | ||||| | || || ||||||| ||| ||| |||||| ||| |||||
Sbjct 67 ACTCGTCTGGG-CGTTCTCATGGAGAGAGATGATATTGTTTCTACTTTCAAAGAGAAAAT 125
Query 149 CTGCAAGGAACATG-AACAGTGTTTCCCAAGTGTTGGAAGCATTACTGTCTCTGCTTTGA 207
||| || || |||| ||| ||||||||||||| |||||| ||| ||| |||| |||||||
Sbjct 126 CTGTAAAGAGCATGAAAC-GTGTTTCCCAAGTTTTGGAAACATCACTATCTCCGCTTTGA 184
Query 208 AGGTTAAATATGGTGGTCAATTTTATCACGTGGCTGA-TTTAATGATTTTGAACAATGTT 266
||||||||| |||||||||||||||||| | | ||| | | | |||||||||| | |
Sbjct 185 AGGTTAAATGTGGTGGTCAATTTTATCATTTAGTTGACTCT-CTCATTTTGAACACGGCT 243
Query 267 TTCCAAAGCATAAGTGACAACCACTCGTTTCTATTTGTTGATGT-CTTGAGGGTTGAGGA 325
|||| ||||| || | || | |||||||| |||| ||||| | |||||||||||||
Sbjct 244 TTCCCAAGCA-AA--G--AA--A--CGTTTCTAGTTGTCGATGTGC-TGAGGGTTGAGGA 293
Query 326 GAAGGGTATTATGCTGACTGGA-AAAGCTTCTTTTTCAAGCCCTAAGCTACTTGAGATAG 384
|||||||| |||||||| ||| ||| || | || |||| |||||| ||||||||| ||
Sbjct 294 GAAGGGTAAGATGCTGACCGGAGAAA-CTCCGTTGTCAAACCCTAATTTACTTGAGAGAG 352
Query 385 AGACCAATGATATGACGGTTAAGGAAGCTCCGGTAACCCAAGCTGGTGATAAGAAAAGTA 444
||||||| || | | |||||| | | | | |||| |||| ||
Sbjct 353 AGACCAA-GA-CT-A---TTAAGG-A-------T-------G-T--TGAT---AAAACTA 385
Query 445 GAAAGAGGAAACAT-AAAACTTTAGATAGCGCGCATGCCAACCA-AAGTCGTAAGAAA-T 501
||||||||||| | |||| ||| |||| | |||||| | ||||||||||||| |
Sbjct 386 AAAAGAGGAAAC-TGAAAAGTTTGGATA----G--TGCCAA-AAGAAGTCGTAAGAAACT 437
Query 502 GCTCTCTTGGT-GACCAGTCAAGTGGTAAAGGAGAGGTTCCAA-CTGGAACAATAGGCAA 559
|||||| || || ||||||||||||||||||| |||| || || ||||||| ||
Sbjct 438 -ATCTCTT-GTGGATCAGTCAAGTGGTAAAGGAGTGGTT-GAACCTTTTGCAATAGGAAA 494
Query 560 AGACCTTGAAAAGGGAGAAAAAAGTGCTGCTACGGTTGACCAAGAGAAGGATCTTGCACT 619
|||||||||||||||||||||||||| |||||||| | | | | |||||
Sbjct 495 AGACCTTGAAAAGGGAGAAAAAAGTGTTGCTACGGAT-A------------T-T-GCACT 539
Query 620 TGTGGATGATGAGAACGAGAGTCACAAAGATGATGTTTGTTTAGGAGCAATAGTGCAAGA 679
||||||||||||||||||||||||||||||||||| | ||| | | | ||| ||||
Sbjct 540 TGTGGATGATGAGAACGAGAGTCACAAAGATGATGAT-GTTC-GT-GTAGTAG---AAGA 593
Query 680 CTTTAATCAATCTGCCGATGTTGAGAACGAAGG-ACTCAACAAAGATGGTGGTGATG--G 736
| | ||||||||||| ||||||||||||||||| | |||||||||||| ||||| || |
Sbjct 594 CATCAATCAATCTGCTGATGTTGAGAACGAAGGGA-TCAACAAAGATGATGGTGTTGATG 652
Query 737 -AACTTGGGAATCTTTACCAAAC-CAGAGAGGAGACAAG---CCGGTGACCAATAT-CGT 790
||||| |||||||| |||||| | || |||||| ||| || || |||||||| | |
Sbjct 653 CAACTTCTGAATCTTTTCCAAACTC-GACAGGAGAAAAGAAGCCAGTTACCAATATTC-T 710
Query 791 TGTATTAATGGCGCCTGCAGTTCCAAACAAGAA 823
||||||||||||||||| | |||||||||||
Sbjct 711 TGTATTAATGGCGCCTGT-G--CCAAACAAGAA 740
> AT1G30060.1 | Symbols: | COP1-interacting protein-related |
chr1:10545087-10545906 REVERSE LENGTH=531
Length=531
Score = 231 bits (125), Expect = 7e-60
Identities = 207/245 (84%), Gaps = 12/245 (5%)
Strand=Plus/Plus
Query 66 GTCTTCGTGAAGACAAGTATTGATACTCGTCTGGGACTTCTCCTTGACAGTGATGATAGT 125
||||| |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 28 GTCTTTGTGAAGACTAGTATTGATACTCGTATGGGGCTTCTCCTTGACAGTGATGATAGT 87
Query 126 GTATCTGCTTTCAGAGAAAAAATCTGCAAGGAACATGAACAGTGTTTCCCAAGTGTTGG- 184
||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 88 GTATCTGCTTTCAAAGACAAAATCTGCAAAGAACATGAACAGTGTTTCCCAAGTGTTGGC 147
Query 185 AAGCATTACTGTCTCTGCTTTGAAGGTTAAATATGG-TGGTCAATT-TTATCACGTGGCT 242
|| ||| ||| | ||||| ||||||||||| | ||| |||| ||| ||||||| || |
Sbjct 148 AA-CATCACTATTTCTGCCTTGAAGGTTAACT-TGGGTGGT-AATGATTATCACTTGTCG 204
Query 243 GATT-TAATGATTTTGAACAAT-GTT-TTCCAAAGCATAAGTGACAACCACTCGTTTCTA 299
|||| || |||||||||| || | | ||| || || | ||| |||| ||| |||||||
Sbjct 205 GATTGTA-TGATTTTGAA-AACCGCTCTTC-AAGGCCTCAGTAACAAGGACTGGTTTCTA 261
Query 300 TTTGT 304
| |||
Sbjct 262 TCTGT 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5