BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924121
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708, ... 828 0.0
AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein |... 198 4e-50
AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708, ... 180 1e-44
> AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708,
subfamily A, polypeptide 1 | chr1:20922459-20925619 REVERSE
LENGTH=2052
Length=2052
Score = 828 bits (448), Expect = 0.0
Identities = 478/493 (97%), Gaps = 0/493 (0%)
Strand=Plus/Plus
Query 1 CTTGGAAAGAATATAGATCCATGATGAAATTCACCCATATGGTTATCAATGAGTCTCTTT 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1490 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 1549
Query 61 GTTTAGGGAGTTTGTCACCTGCTATGTTTAGAAAGGTGGTGAGTGATGTGGAGATCAAAG 120
||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1550 GTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGCGGTGAATGATGTGGAGATCAAAG 1609
Query 121 GGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTCTTCATTATGACC 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1610 GGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTCCATCTCTTCTTCATTATGACC 1669
Query 181 CTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1670 CTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAATTGC 1729
Query 241 TTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAG 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGCAG 1789
Query 301 AGTTTGCTAGGCTTGGGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTTGT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1790 AGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTTCT 1849
Query 361 CTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGCTTCGATTCTCCAAGCCGATAC 420
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1850 CTTTGATCGATAAATCTTATATCATCCGAGCACCCTTACTTCGATTCTCCAAGCCGATAC 1909
Query 421 GCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATCAATATGCAAATCTTTTTTAGT 480
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1910 GCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATCAAAATGCAAATCTTTTTTAGT 1969
Query 481 ATTGTGTTATGAA 493
|||||||||||||
Sbjct 1970 ATTGTGTTATGAA 1982
> AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein
| chr3:16432443-16434848 FORWARD LENGTH=1440
Length=1440
Score = 198 bits (107), Expect = 4e-50
Identities = 280/362 (77%), Gaps = 18/362 (5%)
Strand=Plus/Plus
Query 1 CTTGGAAAGAATATAGATC-CATGATGAAATTCACCCATATGGTTATCAATGAGTCTCTT 59
||||| ||||||| ||| | || ||||| |||||| | |||||||||||||||||||||
Sbjct 989 CTTGGGAAGAATACAGA-CACAAGATGACTTTCACCAACATGGTTATCAATGAGTCTCTT 1047
Query 60 TGTTTAGGGAGTTTGTCACC--TGCTATGTTTAGAAAGGTGGT-GAGTGATGTGGAGATC 116
| || | ||| | || || | | |||||||| | ||| || |||||||| |||
Sbjct 1048 CGAATAACAAACTTGGCTCCTATG-T-TATTTAGAAAAGCGGTAAAG-GATGTGGAAATC 1104
Query 117 AAAGGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTA 175
||||| || || ||||||||||| ||||| || | || || | || || | ||||||
Sbjct 1105 AAAGGATACACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTT 1163
Query 176 TGACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGG 234
||| ||| ||||||||||| || || | |||||||||||||||||||||||||||||| |
Sbjct 1164 TGATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAG 1222
Query 235 AATTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGC 292
| |||| | ||| |||||||||||||||| |||||| || | |||| ||| ||
Sbjct 1223 AGTTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGC 1280
Query 293 AGGAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGT 351
|| |||||||||||||||||| ||| | | |||||||||||||||| || || || |
Sbjct 1281 TGGTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTT 1339
Query 352 AT 353
||
Sbjct 1340 AT 1341
> AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708,
subfamily A, polypeptide 3 | chr1:29528253-29530665 FORWARD
LENGTH=1810
Length=1810
Score = 180 bits (97), Expect = 1e-44
Identities = 210/263 (80%), Gaps = 14/263 (5%)
Strand=Plus/Plus
Query 85 TGTTTAGAAAGGTGGTG-AGTGATGTGGAGATCAAAGGGTATACAATTCCAGCAGGATGG 143
||||| |||||| |||| | ||||| ||||||||||| ||||||||||| || || |||
Sbjct 1169 TGTTTCGAAAGGCGGTGCA-AGATGTTGAGATCAAAGGATATACAATTCCGGCTGGTTGG 1227
Query 144 ATTGTATTGGTTGTTCCATCTCTTC--TTCATTATGACCCT-CAAATCTATGAACAA-CC 199
||||| ||||| || | || | |||||| ||| ||| | |||||||| | || ||
Sbjct 1228 ATTGTGGCGGTTGCACC-T-TCAGCGGTTCATTTTGATCCTGC-AATCTATG-AGAACCC 1283
Query 200 ATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGCTTTGTGGCTCTAAAACGTT 259
|| |||||||||||||||||||||||||||||| ||| || |||| || |||||||||||
Sbjct 1284 ATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAATGATTTGGGGATCTAAAACGTT 1343
Query 260 CATGGCGTTTGG-TGGTGGTGCAAGACTATGTGCAGGAGCAGAGTTTGCTA-GGCTTGGG 317
|||||||||||| | ||| | ||||| |||| ||| ||||||||| | | |||||
Sbjct 1344 CATGGCGTTTGGATA-TGGAGTTAGACTTTGTGTAGGTGCAGAGTTTTC-ACGGCTTCAA 1401
Query 318 ATGGCTATATTTCTTCATCATCT 340
||||| || || || ||||||||
Sbjct 1402 ATGGCAATCTTCCTCCATCATCT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23810985678
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5