BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924122
Length=485
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structura... 193 2e-48
> AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056262-25062625 FORWARD
LENGTH=3763
Length=3763
Score = 193 bits (104), Expect = 2e-48
Identities = 185/221 (84%), Gaps = 18/221 (8%)
Strand=Plus/Plus
Query 140 TTGTAATTAGTGGTAGTAACAAGCATTTGATAAATGGGAAGCTTGCACAACCTAGTCAAG 199
||||| || |||| || |||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 366 TTGTAGTTGGTGGAAGGAACAAGTATTTGATAAATGGGAAGCTAGCACAACCAAGTCAAG 425
Query 200 TCCAGAATCT-TTTCCACTCTGTGCAGCTTAATAATGTCAACAATCCACACTTTCTCATC 258
| |||||||| ||| ||||| ||||||| | ||||||||||||||||||||||||||||
Sbjct 426 TTCAGAATCTATTT-CACTCGGTGCAGC-T--TAATGTCAACAATCCACACTTTCTCATC 481
Query 259 ATGCAAGGTAGAATCACCAAAGTCTTAAACATGAAACCTCCCGAGATA----C--TG-T- 310
|||||||| | ||||||||||| || || ||||| ||||| |||||| | || |
Sbjct 482 ATGCAAGGGCGTATCACCAAAGTTTTGAATATGAAGCCTCCGGAGATATTGTCCATGCTT 541
Query 311 G--G--G-TGCTGgaacaagaatgtatgaaaacaagaaaga 346
| | | |||||||||||| ||||||||||||||||||||
Sbjct 542 GAAGAAGCTGCTGGAACAAGGATGTATGAAAACAAGAAAGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23107707620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5