BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924124
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708, ... 741 0.0
AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708, ... 148 4e-35
AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein |... 145 5e-34
> AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708,
subfamily A, polypeptide 1 | chr1:20922459-20925619 REVERSE
LENGTH=2052
Length=2052
Score = 741 bits (401), Expect = 0.0
Identities = 480/514 (93%), Gaps = 21/514 (4%)
Strand=Plus/Plus
Query 1 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 1549
Query 61 GTTTAGGGAGTTTGTCACCTGCTATGTTTAGAAAGGTGGTGAGTGATGTGGAGATCAAAG 120
||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1550 GTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGCGGTGAATGATGTGGAGAT----- 1604
Query 121 GCAAGTTTGAGTCTCTCTTTTGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTC 180
||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct 1605 -CAA-----AG----------GGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTC 1648
Query 181 CATCTCTTCTTCATTATGACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 CATCTCTTCTTCATTATGACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGA 1708
Query 241 GATGGGAGGGGAAGGAATTGCTTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTG 300
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1709 GATGGGAGGGGAAAGAATTGCTTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTG 1768
Query 301 CAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCTTGGGATGGCTATATTTCTTCATCATC 360
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1769 CAAGACTATGTGCAGGAGCAGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATC 1828
Query 361 TAGTCACAACGTATGACTTGTCTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGC 420
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 1829 TAGTCACAACGTATGACTTCTCTTTGATCGATAAATCTTATATCATCCGAGCACCCTTAC 1888
Query 421 TTCGATTCTCCAAGCCGATACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1889 TTCGATTCTCCAAGCCGATACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATC 1948
Query 481 AATATGCAAATCTTTTTTAGTATTGTGTTATGAA 514
|| |||||||||||||||||||||||||||||||
Sbjct 1949 AAAATGCAAATCTTTTTTAGTATTGTGTTATGAA 1982
> AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708,
subfamily A, polypeptide 3 | chr1:29528253-29530665 FORWARD
LENGTH=1810
Length=1810
Score = 148 bits (80), Expect = 4e-35
Identities = 178/224 (79%), Gaps = 12/224 (5%)
Strand=Plus/Plus
Query 144 TATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTC--TTCATTATGACC 201
||||||||||| || || |||||||| ||||| || | || | |||||| ||| |
Sbjct 1207 TATACAATTCCGGCTGGTTGGATTGTGGCGGTTGCACC-T-TCAGCGGTTCATTTTGATC 1264
Query 202 CT-CAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATT 259
|| | |||||||| | || |||| |||||||||||||||||||||||||||||| ||| |
Sbjct 1265 CTGC-AATCTATG-AGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAAT 1322
Query 260 GCTTTGTGGCTCTAAAACGTTCATGGCGTTTGG-TGGTGGTGCAAGACTATGTGCAGGAG 318
| |||| || ||||||||||||||||||||||| | ||| | ||||| |||| ||| |
Sbjct 1323 GATTTGGGGATCTAAAACGTTCATGGCGTTTGGATA-TGGAGTTAGACTTTGTGTAGGTG 1381
Query 319 CAGAGTTTGCTA-GGCTTGGGATGGCTATATTTCTTCATCATCT 361
|||||||| | | ||||| ||||| || || || ||||||||
Sbjct 1382 CAGAGTTTTC-ACGGCTTCAAATGGCAATCTTCCTCCATCATCT 1424
> AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein
| chr3:16432443-16434848 FORWARD LENGTH=1440
Length=1440
Score = 145 bits (78), Expect = 5e-34
Identities = 181/230 (79%), Gaps = 10/230 (4%)
Strand=Plus/Plus
Query 150 ATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTATGACCCTCAAAT 208
||||||||||| ||||| || | || || | || || | |||||| ||| ||| ||||
Sbjct 1117 ATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTTTGATCCTGAAAT 1175
Query 209 CTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATTGCTTTG-T 266
||||||| || || | |||||||||||||||||||||||||||||| || |||| | |
Sbjct 1176 CTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAGTTGCGG-GCT 1233
Query 267 GGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGCAGGAGCAGAGTT 325
|| |||||||||||||||| |||||| || | |||| ||| || || ||||||||
Sbjct 1234 GGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGCTGGTGCAGAGTT 1292
Query 326 TGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGTAT 374
|||||||||| ||| | | |||||||||||||||| || || || |||
Sbjct 1293 TGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTTAT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24865902765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5