BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924126
Length=599
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708, ... 616 1e-175
> AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708,
subfamily A, polypeptide 1 | chr1:20922459-20925619 REVERSE
LENGTH=2052
Length=2052
Score = 616 bits (333), Expect = 1e-175
Identities = 362/376 (96%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 205 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATTTTCTTCTTCATTATG 264
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 1608 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTCCA-TCTCTTCTTCATTATG 1666
Query 265 ACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGTAAGGAAT 324
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1667 ACCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAAT 1726
Query 325 TGCTTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATTTGCAGGAG 384
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1727 TGCTTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAG 1786
Query 385 CAGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CAGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACT 1846
Query 445 TGTCTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGCTTCAATTCTCCAAGCCGA 504
| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 1847 TCTCTTTGATCGATAAATCTTATATCATCCGAGCACCCTTACTTCGATTCTCCAAGCCGA 1906
Query 505 TACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATCAATATGCAAATCTTTTTT 564
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1907 TACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATCAAAATGCAAATCTTTTTT 1966
Query 565 -GTATTGTGTTATGAA 579
|||||||||||||||
Sbjct 1967 AGTATTGTGTTATGAA 1982
Score = 207 bits (112), Expect = 7e-53
Identities = 118/121 (98%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 1 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 CTTGGAAAGAATATAGATCCATGATGAATTTCACCCATATGGTTATCAATGAGTCTCTTC 1549
Query 61 GTTTAGGGAGTTTGTCACCTGCTATGTTTAGAAAGGTGGTGAGTGATGTGGAGATCAAAG 120
||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1550 GTTTAGGAAGTTTGTCACCTGCTATGTTTAGAAAGGCGGTGAATGATGTGGAGATCAAAG 1609
Query 121 G 121
|
Sbjct 1610 G 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28834400378
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5