BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924128
Length=472
Score E
Sequences producing significant alignments: (Bits) Value
AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708, ... 638 0.0
AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708, ... 150 1e-35
AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein |... 147 1e-34
> AT1G55940.1 | Symbols: CYP708A1 | cytochrome P450, family 708,
subfamily A, polypeptide 1 | chr1:20922459-20925619 REVERSE
LENGTH=2052
Length=2052
Score = 638 bits (345), Expect = 0.0
Identities = 365/375 (97%), Gaps = 0/375 (0%)
Strand=Plus/Plus
Query 92 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTCTTCATTATGA 151
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1608 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTGGTTCCATCTCTTCTTCATTATGA 1667
Query 152 CCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAATT 211
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1668 CCCTCAAATCTATGAACAACCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAATT 1727
Query 212 GCTTTGTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGC 271
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 GCTTTCTGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCAAGACTATGTGCAGGAGC 1787
Query 272 AGAGTTTGCTAGGCTTGGGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTT 331
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 AGAGTTTGCTAGGCTTCAGATGGCTATATTTCTTCATCATCTAGTCACAACGTATGACTT 1847
Query 332 GTCTTTGATCGATAAATCTTATATCATTCGAGCACCCTTGCTTCGATTCTCCAAGCCGAT 391
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1848 CTCTTTGATCGATAAATCTTATATCATCCGAGCACCCTTACTTCGATTCTCCAAGCCGAT 1907
Query 392 ACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCCCATCAATATGCAAATCTTTTTTA 451
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 1908 ACGCATAACGATCTCCGAGAATCCTTTAAGTTCATCTCATCAAAATGCAAATCTTTTTTA 1967
Query 452 GTATTGTGTTATGAA 466
|||||||||||||||
Sbjct 1968 GTATTGTGTTATGAA 1982
> AT1G78490.1 | Symbols: CYP708A3 | cytochrome P450, family 708,
subfamily A, polypeptide 3 | chr1:29528253-29530665 FORWARD
LENGTH=1810
Length=1810
Score = 150 bits (81), Expect = 1e-35
Identities = 181/228 (79%), Gaps = 12/228 (5%)
Strand=Plus/Plus
Query 92 AGGGTATACAATTCCAGCAGGATGGATTGTATTGGTTGTTCCATCTCTTC--TTCATTAT 149
||| ||||||||||| || || |||||||| ||||| || | || | |||||| |
Sbjct 1203 AGGATATACAATTCCGGCTGGTTGGATTGTGGCGGTTGCACC-T-TCAGCGGTTCATTTT 1260
Query 150 GACCCT-CAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGG 207
|| ||| | |||||||| | || |||| |||||||||||||||||||||||||||||| |
Sbjct 1261 GATCCTGC-AATCTATG-AGAACCCATTTGAGTTTAATCCATGGAGATGGGAGGGGAAAG 1318
Query 208 AATTGCTTTGTGGCTCTAAAACGTTCATGGCGTTTGG-TGGTGGTGCAAGACTATGTGCA 266
|| || |||| || ||||||||||||||||||||||| | ||| | ||||| |||| |
Sbjct 1319 AAATGATTTGGGGATCTAAAACGTTCATGGCGTTTGGATA-TGGAGTTAGACTTTGTGTA 1377
Query 267 GGAGCAGAGTTTGCTA-GGCTTGGGATGGCTATATTTCTTCATCATCT 313
|| ||||||||| | | ||||| ||||| || || || ||||||||
Sbjct 1378 GGTGCAGAGTTTTC-ACGGCTTCAAATGGCAATCTTCCTCCATCATCT 1424
> AT3G44970.1 | Symbols: | Cytochrome P450 superfamily protein
| chr3:16432443-16434848 FORWARD LENGTH=1440
Length=1440
Score = 147 bits (79), Expect = 1e-34
Identities = 188/240 (78%), Gaps = 10/240 (4%)
Strand=Plus/Plus
Query 92 AGGGTATACAATTCCAGCAGGATGGATTGT-ATTGGTTGTTCCATCTCTTCTTCATTATG 150
||| || || ||||||||||| ||||| || | || || | || || | |||||| ||
Sbjct 1107 AGGATACACCATTCCAGCAGGTTGGATAGTGA-TGATTATACCTTCAGTGGTTCATTTTG 1165
Query 151 ACCCTCAAATCTATGAACAA-CCATGTGAGTTTAATCCATGGAGATGGGAGGGGAAGGAA 209
| ||| ||||||||||| || || | |||||||||||||||||||||||||||||| ||
Sbjct 1166 ATCCTGAAATCTATGAA-AACCCTTTTGAGTTTAATCCATGGAGATGGGAGGGGAAAGAG 1224
Query 210 TTGCTTTG-TGGCTCTAAAACGTTCATGGCGTTTGGTGGTGGTGCA-AGACTATGTGCAG 267
|||| | ||| |||||||||||||||| |||||| || | |||| ||| || |
Sbjct 1225 TTGCGG-GCTGGATCTAAAACGTTCATGGTGTTTGGAACCGGA-CTTAGACAATGCGCTG 1282
Query 268 GAGCAGAGTTTGCTAGGCTTGGGATGGCTA-TATTTCTTCATCATCTAGTCACAACGTAT 326
| |||||||||||||||||| ||| | | |||||||||||||||| || || || |||
Sbjct 1283 GTGCAGAGTTTGCTAGGCTTCAGATTTC-AGTATTTCTTCATCATCTTGTTACCACTTAT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454663709
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5