BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924131
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01370.1 | Symbols: | DNA-binding storekeeper protein-relat... 490 1e-137
AT1G55950.1 | Symbols: | DNA-binding storekeeper protein-relat... 283 2e-75
> AT2G01370.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr2:168631-169642 REVERSE
LENGTH=1012
Length=1012
Score = 490 bits (265), Expect = 1e-137
Identities = 486/586 (83%), Gaps = 41/586 (7%)
Strand=Plus/Plus
Query 374 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 432
||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||
Sbjct 315 TACCAAAAAGAATTATTTTCAAA-GAATATGGAGTGATGATGATGAGATTGTTTTGCTGC 373
Query 433 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 492
|||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 374 AAGGCATGGTTGATTTTGAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGGTT 433
Query 493 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAG-AGTCAATTCACTACC 551
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||
Sbjct 434 TTATTGATACGGTGAAGAACTTCATTAGCTTTCAAGCGAATCAACA-TCAATTCACAACC 492
Query 552 AAGATCCGTCGCTTAAAGGACAAGTATC-TCC-GAAAGAGGAACAAGGGTGCAGATGAGA 609
|| ||||||||||| |||||||||| || || |||| ||||||| |||| ||||||||
Sbjct 493 AAAATCCGTCGCTTGAAGGACAAGT-TCCTCAAGAAAT-GGAACAATGGTGTAGATGAGA 550
Query 610 AATCTTTTGCAAAGGCTCACGACCTGAAATGTTTTCAACTTTCCAAATTGATTTGGGAAT 669
| ||| ||| ||| |||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 551 ACTCTCTTGTAAATGCTCACGACCGGAAATGTTTTCAACTTTCCAAAGTAATTTGGGAAC 610
Query 670 CTACTAAGGTGAAGGAGGAGTCTTTGAAACCCAATGAAGAAAAGGTATTAGATTGGTTCG 729
|||| || | |||| |||| || | | | || | |||||||| |
Sbjct 611 CTAC-AAC-T-AAGGTGGAG-----GA--------G--GTA--GG-A---GATTGGTTTG 646
Query 730 TAAATTCTTCTCTTGTAGGATCAATTGCGAGCTTTGGGGTG-GCTGAAGATGTCGTGAAA 788
||||||||| ||||||||||||||||||||| || |||||| | |||||| || |||||
Sbjct 647 TAAATTCTTATCTTGTAGGATCAATTGCGAGGTTAGGGGTGAG-TGAAGACGTAATGAAA 705
Query 789 CAGAGATGGAGCATGGTATC-GAT-GAAGATGAAGAAGGAGCTCGAAGAGAAGTTCAAGT 846
||||| ||||||||||| || ||| || || |||||||||| |||||||||||||||||
Sbjct 706 CAGAGTTGGAGCATGGT-TCCGATAGA-GACGAAGAAGGAGGTCGAAGAGAAGTTCAAGC 763
Query 847 TGCTCAAAGAAAAAGAATCTGAATATTTGTGGCTAAAGACAAGGTTTTTCCATGAGGTTA 906
|| | ||||| ||||||||||| | | ||||||||||||| ||||| || |||| |
Sbjct 764 TGTTGAAAGATGAAGAATCTGAAAACCTACGGCTAAAGACAAGTTTTTTGCAAAAGGTCA 823
Query 907 ACTCTTTGATCGCTGAAGGAA-A--TTAGACAAGTATCGATTTAGA 949
||||| ||||| ||||| || | ||||||||||||||| |||||
Sbjct 824 ACTCTATGATCATTGAAGCAACAAATTAGACAAGTATCGAATTAGA 869
Score = 76.8 bits (41), Expect = 3e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 128 CAAGCGTCTCAAACCGGAGGAAGATCCATCGACGGTGAAGAGGTGTC 174
|||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 186 CAAGCGTCTCAAACCGGAGGAAGATCCATCGATGGTGAAGAGGCGTC 232
> AT1G55950.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:20926839-20927450 REVERSE
LENGTH=612
Length=612
Score = 283 bits (153), Expect = 2e-75
Identities = 221/253 (87%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 374 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 432
|||||||||||| |||||||||| ||| | |||||| |||||| ||||||||||| |||
Sbjct 342 TACCAAAAAGAAGTATTTTCAAA-GAATATTGAGTGATGATGATAAGATCGTCTTGTTGC 400
Query 433 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 492
|||||||| | |||||| ||||||||||||||| || | |||||||||||||||||| ||
Sbjct 401 AAGGCATGGTTGATTTCCAGAATGATAAAGGGACGATTTCTTATGATGATATGACTGGTT 460
Query 493 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAGA-GTCAATTCACTACC 551
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 461 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAAT-AGTCGTCAATTCACTACC 519
Query 552 AAGATCCGTCGCTT-AAAGGACAAGTATCTCC-GAAAGAGGAACAAGGGTGCAGATGAGA 609
|| |||||||| || |||| |||||| | | | |||| |||||||| |||| ||||||||
Sbjct 520 AAAATCCGTCGTTTGAAAG-ACAAGTTTGTACAGAAA-AGGAACAAAGGTGTAGATGAGA 577
Query 610 AATCTTTTGCAAA 622
| ||| | |||||
Sbjct 578 ACTCTCTAGCAAA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5