BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924139

Length=1103
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G56030.1 | Symbols:  | RING/U-box superfamily protein | chr1...   294    1e-78
  AT1G56040.1 | Symbols:  | HEAT/U-box domain-containing protein ...   224    1e-57


> AT1G56030.1 | Symbols:  | RING/U-box superfamily protein | chr1:20957098-20958550 
REVERSE LENGTH=1116
Length=1116

 Score =  294 bits (159),  Expect = 1e-78
 Identities = 346/429 (81%), Gaps = 41/429 (10%)
 Strand=Plus/Plus

Query  452  ACTTCAAGTTAAAGCCTTGGAGCACAAACATGAAGCAGAGTTGCAGCGTAGGACAGAAAC  511
            |||||||||  |||||||||||||||||||| ||||| ||||||||| ||||||||||||
Sbjct  522  ACTTCAAGTCGAAGCCTTGGAGCACAAACATAAAGCAAAGTTGCAGCTTAGGACAGAAAC  581

Query  512  TGAAATCGCGTTAGCCATAGAACGTGATTATATGCGTTGGAAGGCTGAGTATTT-CGAGA  570
            ||||| |||| |||||||||||||||||||||||||||||||||||||  |||| |||||
Sbjct  582  TGAAACCGCGGTAGCCATAGAACGTGATTATATGCGTTGGAAGGCTGAA-ATTTTCGAGA  640

Query  571  GCGAATACAACGAAG-AACTGGCACGCAGGAGAGAA---GA-----C----G-T---GAA  613
            |||||| |||| ||  || ||| || ||||||||||   ||     |    | |   |||
Sbjct  641  GCGAATTCAAC-AATCAATTGGTACTCAGGAGAGAATCAGAAATTGCACTTGATAAAGAA  699

Query  614  AGC---GT--TGGAGGGG-TTAAAGCAA-CTGCATGAAACT-GTAATAATAGaaaaaaaG  665
            ||    |   |||||||  |||||  || |||| ||||||| ||  | | || | |||||
Sbjct  700  AGGAAAGAGCTGGAGGGTATTAAA--AATCTGCTTGAAACTTGTT-TCACAGGACAAAAG  756

Query  666  AACCTGAATTCACAGGTGATAACATGGCAAGACAAGTACGACCAAGAGTCAATTATTAGa  725
            |||||||| || ||||||||||||||| |||||||||||||||||| ||||| |||||| 
Sbjct  757  AACCTGAAATCGCAGGTGATAACATGGAAAGACAAGTACGACCAAGGGTCAAGTATTAGG  816

Query  726  aaa-aaaaCAGAGGATT-CGCTTTCTACTAA-AATACTAGCGCTCAAGATTGTCAAAGGA  782
            ||| |||| ||||| || | ||||||||||| || |||||  ||| ||||| |||||  |
Sbjct  817  AAAGAAAA-AGAGG-TTGCTCTTTCTACTAAGAA-ACTAGAACTCGAGATTTTCAAAC-A  872

Query  783  ATT-GTCGAATCGTACAAACAAGAAACAGATGCAATGCGACAAGAGA-AGGACAATGCTC  840
              | | || |||||||||||||||  ||||||| ||||||||||||| || |||||||||
Sbjct  873  GCTAGCCGGATCGTACAAACAAGATGCAGATGCGATGCGACAAGAGAGAG-ACAATGCTC  931

Query  841  TTAAAACAG  849
            | |||||||
Sbjct  932  TCAAAACAG  940


 Score =  211 bits (114),  Expect = 1e-53
 Identities = 154/173 (89%), Gaps = 3/173 (2%)
 Strand=Plus/Plus

Query  905   ACAGGATGTCATGGAAGATCCACACATGGCTGCCGATGGATTCACATACGAATTAGAAGC  964
             ||| ||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct  937   ACA-GATGTCATGAAAAATCCACACATGGCTGCTGATGGATTCACATACGAATTAGAAGC  995

Query  965   TATT-AAGAAATGGATTAGCACAGGTCACAAGACGTCGCCGATGACAAATCTCAAACTGT  1023
             |||| || |||||||||| ||||||||||| ||||||||||||||| ||||||||||| |
Sbjct  996   TATTCAA-AAATGGATTAACACAGGTCACAGGACGTCGCCGATGACTAATCTCAAACTTT  1054

Query  1024  CACATCTCAACCTTGTCCCTAACCGTGCTCTCTACTCTGCGATTCAGGAGTTG  1076
             ||||| ||| | || |||||||||| ||||||  |||||| ||| ||||||||
Sbjct  1055  CACATTTCAGCTTTTTCCCTAACCGAGCTCTCCGCTCTGCAATTGAGGAGTTG  1107


> AT1G56040.1 | Symbols:  | HEAT/U-box domain-containing protein 
| chr1:20960356-20962334 REVERSE LENGTH=1458
Length=1458

 Score =  224 bits (121),  Expect = 1e-57
 Identities = 177/202 (88%), Gaps = 11/202 (5%)
 Strand=Plus/Plus

Query  345  GAAGTCAAGCTTAGG---GAAGGAGAAGATGCACTTTCTA-GAACAAAGGAAGAAGTAGA  400
            ||||| |||||||||   |||| ||||||||||||| ||| ||| ||||||||| |||||
Sbjct  646  GAAGTAAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTATGAA-AAAGGAAGATGTAGA  704

Query  401  GATGATGGAACAGTTACTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACTTCAAGT  460
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| 
Sbjct  705  GATGATGGAACAGTTGCTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACTACAAGC  764

Query  461  TAAAGCCTTGGAGCACAAACATGAAGCAGAGTTGCAG-CGTAGGACAGAAACTGAAATC-  518
            |||||||||||||||||| | ||||||||||||| || | ||||| |||||| |||| | 
Sbjct  765  TAAAGCCTTGGAGCACAAGCTTGAAGCAGAGTTG-AGGCATAGGAAAGAAACAGAAACCT  823

Query  519  -GCGTTAGCCATAGAACGTGAT  539
             || || ||||||||||| |||
Sbjct  824  TGC-TT-GCCATAGAACGGGAT  843



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 54065986965


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5