BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924140
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56040.1 | Symbols: | HEAT/U-box domain-containing protein ... 1927 0.0
AT1G56030.1 | Symbols: | RING/U-box superfamily protein | chr1... 484 7e-136
> AT1G56040.1 | Symbols: | HEAT/U-box domain-containing protein
| chr1:20960356-20962334 REVERSE LENGTH=1458
Length=1458
Score = 1927 bits (1043), Expect = 0.0
Identities = 1218/1302 (94%), Gaps = 14/1302 (1%)
Strand=Plus/Plus
Query 43 AGTCTCTAGTGTCTTGCATTTTCGATATGGCAATGGTGGAAAATTCCTATGTCTTATTCG 102
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 164 AGTCTCTAGTGTCTTGCGTTTTCGATATGGCAATGGTGGAAAACTCCTATGTCTTATTCG 223
Query 103 CTCGCTTATGCGTAGAGCTTTTTCACGAGCTTCCTCCTCTTCCATCAGATGAATCTCACG 162
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 224 CTCGTTTATGCGTAGAGCTTTTTCACGAGCTTCCTCCACTTCCATCAGATGAATCTCACG 283
Query 163 GCGATATTACAACTTTTGAGAGACTGTTTTTGCGTAAATGCCGAATTGAGCTTGAAAACT 222
|||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 284 GCGATATTACAACTTTTGAGAGACTGTTCTTGCGCAAATGCAGAATTGAGCTTGAAAACG 343
Query 223 CATCCCCCAAAACAGAACATTTACCACTTGTTTATGTTGATGAATCAAACTGTTACAGAT 282
||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 344 CATCCCCTAAAACAGAACATTTACCACTTGTTTATGTTGATGAAACAAACTATTACAGAT 403
Query 283 TCATCAAAACCGTAAGGGTTTTAGCTGAAGTTT-TCAAGAATAAG-AAGATCACTGAAAC 340
||||||||||||||||||||||||||||||||| | |||||| || |||||||| |||||
Sbjct 404 TCATCAAAACCGTAAGGGTTTTAGCTGAAGTTTAT-AAGAAT-AGCAAGATCACAGAAAC 461
Query 341 AACCCGTAAAAGCATAATTCAGGTGCTTATGAATCCCATCTTACCACCTGAGAGGATCAC 400
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 462 AACCCGGAAAAGTATGATTCAGGTGCTTATGAATCCCATCTTACCACCTGAGAGGATTAC 521
Query 401 CGATGCGATGAATTTATTTCTGTCCACCATTGGAAAACTAGCTGACTTCCATTTTTCTGA 460
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 522 CGATGCGATGAATTTATTTCGGTCCATCATTGGAAAACTAGCTGACTTCCATTTTTCTGA 581
Query 461 TGAAAATTTCAATCAGCTAATTCGAAGTTCTCGGGCT-GTAGAGTTAGAGAGAAATTACA 519
|||||| |||||||||||| |||| |||||||||| | |||||||| ||| |||||||||
Sbjct 582 TGAAAAATTCAATCAGCTAGTTCGTAGTTCTCGGG-TAGTAGAGTTGGAGGGAAATTACA 640
Query 520 ATGACGAAGTAAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTA-GAAAAAAGAAAGAA 578
|||| |||||||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct 641 ATGAAGAAGTAAAGCTTAGGAAAGAAGCAGAAGATGCACTTGCTATG-AAAAAGGAAGAT 699
Query 579 GTGGAGATGATGGAACGA-TTACTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACT 637
|| ||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 700 GTAGAGATGATGGAAC-AGTTGCTTGAGTCTTACAAGGAAGAACAAGGTAAATTGCAACT 758
Query 638 TCAAGCTAAAGCCTTGGAGCACAAGCATGAAGCAGAGTTGAGGCATAGGAAAGAAACTGA 697
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 759 ACAAGCTAAAGCCTTGGAGCACAAGCTTGAAGCAGAGTTGAGGCATAGGAAAGAAACAGA 818
Query 698 AACCTTGCTTGCCATAGAACGGGAGAGGTTAGAGAAGGTAAAGATTCAACTGGAAACTGT 757
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 819 AACCTTGCTTGCCATAGAACGGGATAGGATAGAGAAGGTAAAGATTCAACTGGAAACTGT 878
Query 758 TGAAAATGAACGCGATGATACGCGTTTGAAGGCTAAAGAGTTCGAAAGCAAGTACGAGGG 817
|||||||||| ||| ||||||||||||||||| | ||||| ||||| |||||||||||
Sbjct 879 TGAAAATGAAATTGATAATACGCGTTTGAAGGCTGAGGAGTTTGAAAGAAAGTACGAGGG 938
Query 818 TGAGATGATTCTCAGGATAGGATCAGAGAGTGCGCTGGATAAAGAAAGGAAAGAGTTGGA 877
||||||||||||||||| || |||||||| ||||||||| ||||||| ||||||||||||
Sbjct 939 TGAGATGATTCTCAGGAGAGAATCAGAGATTGCGCTGGAGAAAGAAAAGAAAGAGTTGGA 998
Query 878 AGAAGTAAAGCTACTGCTTGAAACCTACAAAACAGAGCAAGAGAGTCTGACCTCAGAGGT 937
||||||||||||| ||||||||||||| ||| ||||||||||| |||| ||||||||||
Sbjct 999 AGAAGTAAAGCTAAAGCTTGAAACCTACGAAAGAGAGCAAGAGAATCTGTCCTCAGAGGT 1058
Query 938 CAGAACTTGGCAGGACAAGTACGAGCAAGAGT-GTCGTCTACGGAAACTAGGGGAGGATG 996
|||||||||||||||||||||||||||||||| | |||| ||||||||| | ||| |||
Sbjct 1059 CAGAACTTGGCAGGACAAGTACGAGCAAGAGTCG-AGTCTTCGGAAACTAAGTGAGTATG 1117
Query 997 CACTTTCTAGAGAACAAGAAGAGCTTCAGATAGTCAAAGGACTGCTAGAATTTTACAACG 1056
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1118 CACTTTCTAGAGAACAAGAAGAGCTTCAGATAGTCAAAGGACTGCTAGAATTTTACAATG 1177
Query 1057 GAGAAGCAGATGCGATGCGAGAAGAGAGGGACAATGCTCTCAAAACAGCAAAAGAGCTAA 1116
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||
Sbjct 1178 GAGAAGCAGATGCGATGCGGGAAGAGAGGGACAAAGCTCTCAAAACAGCAAAAGAGCAAA 1237
Query 1117 TGGAAAAGCGTCAACCTCCATCATCGTTTTTCTACCCTATCACACAGGAGGTCATGAATG 1176
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1238 TGGAAAAGCGTCAACCTCCGTCATCGTTTTTCTGCCCTATCACACAGGAGGTCATGAAAG 1297
Query 1177 ATCCACACTTTGCTGCCGATGGATTCACATACGAAGCAGAATCTATTAGGAAATGGTTTA 1236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1298 ATCCACACTTTGCTGCCGATGGATTCACATACGAAGCAGAATCTATTAGGAAATGGCTTA 1357
Query 1237 GAACAGGTCACCAGACGTCGCCGATGACAAATCTCCCG-CTTCCACATCTCACTCTTGTC 1295
| |||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1358 GCACAGGTCACCAGACGTCGCCGATGACAAATCTCC-GACTTTCACATCTCACTCTTGTC 1416
Query 1296 CCTAATCGTGCTCTCCGGACTGCGATTGAGGAGTTGGTTTGA 1337
||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1417 CCTAACCGTGCTCTCCGCTCTGCGATTGAGGAGTTGGTTTGA 1458
> AT1G56030.1 | Symbols: | RING/U-box superfamily protein | chr1:20957098-20958550
REVERSE LENGTH=1116
Length=1116
Score = 484 bits (262), Expect = 7e-136
Identities = 456/544 (84%), Gaps = 35/544 (6%)
Strand=Plus/Plus
Query 75 ATGGTGGAAAATTCCTATGTCTTATTCGCTCGCTTATGCGTAGAGCTTTTTCACGAGCTT 134
|||||| |||| |||||||| ||||||||||| ||||||||||||| || |
Sbjct 1 ATGGTGAAAAACTCCTATGTATTATTCGCTCGTTTATGCGTAGAGC---TT------C-- 49
Query 135 CCTCCTCTTCCATCAGATGAATCTCACGGCGATATTACAACTTTTGAGAGACTGTTTTTG 194
|| ||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||
Sbjct 50 CC-CCTCTTCCATCAGATGAATCTCACGGCGAAATTACAACTGTAGAGAGACAGTTTTTG 108
Query 195 CGTAAATGCCGAATTGAGCTTGAAAACTCATCCCCCAAAACAGAACATTTACCACTTGTT 254
||||| || | ||| ||||||||||||| |||| ||||||||| | |||||||||||
Sbjct 109 CGTAATTGTCAAATGGAGCTTGAAAACTTGTCCCTCAAAACAGAGC---TACCACTTGTT 165
Query 255 TATGTTGATGAATCAAACTGTTACAGATTCATCAAAACCGTAAGGGTTTTAGCTGAAGTT 314
||||||||||||||||| | || |||||||||||||| || |||||||| ||||| |||
Sbjct 166 TATGTTGATGAATCAAAATATTGGAGATTCATCAAAACTGTTAGGGTTTTGGCTGAGGTT 225
Query 315 TTCAAGAATAAGAAGATC-ACT-GAAACAACCCGTAAAAGCATAATTCAGGTGCTTATGA 372
|| || |||| ||||| | ||| | |||||| || ||||| || ||||||||||||||||
Sbjct 226 TTTAACAATATGAAGA-CTACTCG-AACAACACGGAAAAGTATCATTCAGGTGCTTATGA 283
Query 373 ATCCCATCTTACCACCTGAGAGGATCACCGATGCGATGAATTTATTTCTGTCCACCATTG 432
|||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 284 ATCCCATCTTACCATCTGAGAGAAGCACCGATGCAATGAATTTATTTCTGTCCACCATTG 343
Query 433 GAAAACTAGCTGACTTCCATTTTTCTGATGAAAATTTCAATCAGCTAATTCG-AAGTTCT 491
||||||||||||||| || |||||||||||| ||||||||||||| || | |||||||
Sbjct 344 AAAAACTAGCTGACTTGCAGTTTTCTGATGAAGATTTCAATCAGCT-TTTTGTAAGTTCT 402
Query 492 CGGGC-TG---TAGAGTT--AG-A-GAG-A-AATTACAATGACGAAGTAAAGCTTAGGAA 541
| ||| || || |||| || | || | ||| |||| | |||||| |||||||||||
Sbjct 403 C-GGCTTGATTTACAGTTGGAGAATAAGTACAATGACAAAGTCGAAGTGAAGCTTAGGAA 461
Query 542 AGAAGCAGAAGATGCACTTGCTAGAAAAAAGAAAGAAGTGG-AGAT--GATGGAACGATT 598
||||||||||||||||||||||||||||| || ||||| | |||| || |||||| ||
Sbjct 462 AGAAGCAGAAGATGCACTTGCTAGAAAAATTAAGGAAGTAGTAGATTTGACGGAACGGTT 521
Query 599 ACTT 602
||||
Sbjct 522 ACTT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66816925395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5