BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924146

Length=1262
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:2...   431    9e-120


> AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20056533-20059638 
FORWARD LENGTH=1770
Length=1770

 Score =  431 bits (233),  Expect = 9e-120
 Identities = 291/319 (91%), Gaps = 3/319 (1%)
 Strand=Plus/Plus

Query  19   ATAAATGTCCTTTGACCTGCAACAACTTTCTCAAGCTCTGCAAGATCAAGTACTACAAT-  77
            ||||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||||||| 
Sbjct  175  ATAAATGCCCTTTGACTTGCAAGAACTTCCTTAAGCTTTGCAAGATCAAGTACTACAATG  234

Query  78   GGTGCCTCTTCCACACTGTGCAAAATGATTTCACAGCACAGACGGGTGATCCAACTGCCA  137
            |||| || || |||||||||||||| ||||||||||||||||| |||||||||||||  |
Sbjct  235  GGTGTCTTTTTCACACTGTGCAAAAGGATTTCACAGCACAGACTGGTGATCCAACTGGTA  294

Query  138  CAGGAGCTGGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCGGTTTTTTG  197
            | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||  
Sbjct  295  CGGGAGCTGGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCG-TTTTTAC  353

Query  198  GC-GATGAGATTCATCTCGATTTAAAACATTCAAAGACTGGCATTGTTGCAATGGCCAAT  256
               |||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |
Sbjct  354  AAAGATGAGATTCATCTTGATTTAAAACATTCAAAGACCGGCACTGTTGCAATGGCCAGT  413

Query  257  GGTGGAGAAAATCTGAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATCTGGACTAT  316
            |||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  414  GGTGGAGAGAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATTTGGACTAT  473

Query  317  CTTGATGGGAAACACACTG  335
            |||||||||||||||||||
Sbjct  474  CTTGATGGGAAACACACTG  492



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 62047873620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5