BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924149
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase... 322 2e-87
AT4G00872.1 | Symbols: | Plant invertase/pectin methylesterase... 180 1e-44
> AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:20980369-20983979 REVERSE
LENGTH=699
Length=699
Score = 322 bits (174), Expect = 2e-87
Identities = 207/223 (93%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 21 ATGACGATGATGATCAAGTATCTCCTTTTAACTCTTCTCGTGATCTCTCCGATTTGCGCT 80
|||||||| |||||||||| |||||| ||| |||| |||||||||||||||||||||||
Sbjct 1 ATGACGATAATGATCAAGTTTCTCCTGTTAGCTCTGCTCGTGATCTCTCCGATTTGCGCC 60
Query 81 GAGAAGGACCTGATGATAA-AGGAATGCAACAATGCCCAAGTCCCGACCATTTGCATGCA 139
|||||||||||||||| || |||||||| | ||||| ||||| |||||||||||||||||
Sbjct 61 GAGAAGGACCTGATGA-AAGAGGAATGCCATAATGCACAAGTTCCGACCATTTGCATGCA 119
Query 140 ATGTCTTGAATCCGACCCAACCTCCGTTCATGCTGACCGTGTTGGCATCGCCGATATCAT 199
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 120 ATGTCTTGAATCCGACCCAACCTCCGTTCATGCAGACCGTGTTGGCATCGCCGAGATCAT 179
Query 200 CATACACTGTCTCGACTCTCGCCTCCATATCATCACCAAGCAA 242
||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 180 CATACACTGTCTCGACTCTCGTCTCGATATCATCACCAAGCAA 222
> AT4G00872.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:364147-364736 REVERSE
LENGTH=495
Length=495
Score = 180 bits (97), Expect = 1e-44
Identities = 170/204 (83%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 281 ACTGTCGGAAGCCGAAAC-AGCTCTGACAACCGGTGATTACGACAAAACCGCCAAATCGA 339
||||||||||||| |||| || | ||| |||||||||||| || |||||| ||||||||
Sbjct 297 ACTGTCGGAAGCCAAAACAAG-TTTGAAAACCGGTGATTATGATAAAACCAACAAATCGA 355
Query 340 TAAAGCTTGCGCTTGGCATCCCTCATG-GCTGTCGT-TTCGAGCTACAAA-GAATCAAGT 396
||||||||||||||||| | |||| || | ||| | ||| | || |||| | |||||
Sbjct 356 TAAAGCTTGCGCTTGGCTTTCCTC-TGAGATGT-ATGTTCAATCT-CAAACGTGTCAAG- 411
Query 397 TTGA-GTCTTTCGAGCTATATAGCCAAATCAATATCTATACTCAACTCTCTGATGCTGCT 455
|| | |||| | | |||| ||| ||||||||||||||| ||||||||||||| ||||||
Sbjct 412 TTCACGTCTCCCCAACTATTTAGTCAAATCAATATCTATGCTCAACTCTCTGACGCTGCT 471
Query 456 ATGAGGATCATTGATCGCTTCTAA 479
||||||||||||||||||||||||
Sbjct 472 ATGAGGATCATTGATCGCTTCTAA 495
Score = 165 bits (89), Expect = 4e-40
Identities = 179/221 (81%), Gaps = 11/221 (5%)
Strand=Plus/Plus
Query 29 GATGATCAAGTATCTCCTTTTAACTCTTCTCGTGATCTCT-C-----CGATTTGCGCTGA 82
||||||||||| ||| || |||| | || ||||||||| | |||| ||||| ||
Sbjct 9 GATGATCAAGTTTCTGCTGTTAA---TACTGGTGATCTCTCCTATGTCGATATGCGCCGA 65
Query 83 GAAGGACCTGATGATAAAGGAATGCAACAATGCCCAAGTCCCGA-CCATTTGCATGCAAT 141
||||||| |||||||||| |||||| ||||||| | ||||| | |||| ||||||||||
Sbjct 66 GAAGGACATGATGATAAATGAATGCCACAATGCAGACGTCCC-AGCCATATGCATGCAAT 124
Query 142 GTCTTGAATCCGACCCAACCTCCGTTCATGCTGACCGTGTTGGCATCGCCGATATCATCA 201
|||||||||||||||||| |||| |||| || |||| | | ||||| || | ||| |||
Sbjct 125 GTCTTGAATCCGACCCAAACTCCATTCACGCCGACCATATAGGCATAGCTGGCATCGTCA 184
Query 202 TACACTGTCTCGACTCTCGCCTCCATATCATCACCAAGCAA 242
|| ||||||| || || | ||||||||||||||||||||||
Sbjct 185 TAAACTGTCTTGAATCCCACCTCCATATCATCACCAAGCAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23861219825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5