BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924156
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01370.1 | Symbols: | DNA-binding storekeeper protein-relat... 468 5e-131
AT1G55950.1 | Symbols: | DNA-binding storekeeper protein-relat... 283 2e-75
> AT2G01370.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr2:168631-169642 REVERSE
LENGTH=1012
Length=1012
Score = 468 bits (253), Expect = 5e-131
Identities = 483/587 (82%), Gaps = 43/587 (7%)
Strand=Plus/Plus
Query 380 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 438
||||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||
Sbjct 315 TACCAAAAAGAATTATTTTCAAA-GAATATGGAGTGATGATGATGAGATTGTTTTGCTGC 373
Query 439 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 498
|||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 374 AAGGCATGGTTGATTTTGAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGGTT 433
Query 499 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAG-AGTCAATTCACTACC 557
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||
Sbjct 434 TTATTGATACGGTGAAGAACTTCATTAGCTTTCAAGCGAATCAACA-TCAATTCACAACC 492
Query 558 AAGATCCGTCGCTTAAAGGACAAGTATC-TCC-GAAAGAGGAACAAGGGTGCAGATGAGA 615
|| ||||||||||| |||||||||| || || |||| ||||||| |||| ||||||||
Sbjct 493 AAAATCCGTCGCTTGAAGGACAAGT-TCCTCAAGAAAT-GGAACAATGGTGTAGATGAGA 550
Query 616 AATCTTTTGCAAAGGCTCACGACCTGAAATGTTTTCAACTTTCCAAATTGATTTGGGAAT 675
| ||| ||| ||| |||||||||| |||||||||||||||||||||| | |||||||||
Sbjct 551 ACTCTCTTGTAAATGCTCACGACCGGAAATGTTTTCAACTTTCCAAAGTAATTTGGGAAC 610
Query 676 CTACTAAGGTGAAGGAGGAGTCTTTGAAACCCAATGAAGAAAAGGTATTAGATTGGTTCG 735
|||| || | |||| |||| || | | | || | |||||||| |
Sbjct 611 CTAC-AAC-T-AAGGTGGAG-----GA--------G--GTA--GG-A---GATTGGTTTG 646
Query 736 TAAATTCTTCTCTTGTAGGATCAGTTGCGAGCTTTGGGGTG-GCTGAACATGTCGTGAAA 794
||||||||| ||||||||||||| ||||||| || |||||| | |||| | || |||||
Sbjct 647 TAAATTCTTATCTTGTAGGATCAATTGCGAGGTTAGGGGTGAG-TGAAGACGTAATGAAA 705
Query 795 CAGAGATGGAGCTTGGTATC-GAT-GAAGATGAAGAAGAAGCTCGAAGAGAAGTTCAAGT 852
||||| |||||| |||| || ||| || || ||||||| || |||||||||||||||||
Sbjct 706 CAGAGTTGGAGCATGGT-TCCGATAGA-GACGAAGAAGGAGGTCGAAGAGAAGTTCAAGC 763
Query 853 TGCTCAAAGAA-AAGGAATCTGAATATCTGTGGCTAAAGTCAAGGTTTTTCCATGAGGTT 911
|| | ||||| ||| |||||||| | || |||||||| |||| ||||| || ||||
Sbjct 764 TGTTGAAAGATGAAG-AATCTGAAAACCTACGGCTAAAGACAAGTTTTTTGCAAAAGGTC 822
Query 912 AACTCTTTGATCGCTGAAGCAA-A--TTAGACAAGTATCGATTTAGA 955
|||||| ||||| |||||||| | ||||||||||||||| |||||
Sbjct 823 AACTCTATGATCATTGAAGCAACAAATTAGACAAGTATCGAATTAGA 869
Score = 93.5 bits (50), Expect = 3e-18
Identities = 140/178 (79%), Gaps = 28/178 (16%)
Strand=Plus/Plus
Query 1 TTTATCTTGACaaaaaaaaaaTGAGAGGAATAAC---AAAACTTTTGGCCTCCCGCTCTC 57
||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct 76 TTTATCTTG--AAAAAAAAAATGAAAGGAATAACAAAAAAACTTTTGGTCTCCCGCTCTC 133
Query 58 TCAAAAGTTC-GATGGCCAAGAAGAAGAAGCGTTCACAACCGGA-GAACAAGCTTTCCGA 115
||||| | || || |||| ||||| | ||||||| ||| | | | ||
Sbjct 134 TCAAACG-TCTGACGGCC------AAGAA------A-AACCGGAGGAAGATTC-AT-CG- 176
Query 116 ACTG-GA-GAACAAGCGTCTCAAACCGGAGGAAGATCCATCGACGGTGAAGAGGTGTC 171
| | || ||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 177 A--GAGACGAACAAGCGTCTCAAACCGGAGGAAGATCCATCGATGGTGAAGAGGCGTC 232
> AT1G55950.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr1:20926839-20927450 REVERSE
LENGTH=612
Length=612
Score = 283 bits (153), Expect = 2e-75
Identities = 221/253 (87%), Gaps = 8/253 (3%)
Strand=Plus/Plus
Query 380 TACCAAAAAGAATTATTTTCAAAGGAA-GTGGAGTGAAGATGATGAGATCGTCTTGCTGC 438
|||||||||||| |||||||||| ||| | |||||| |||||| ||||||||||| |||
Sbjct 342 TACCAAAAAGAAGTATTTTCAAA-GAATATTGAGTGATGATGATAAGATCGTCTTGTTGC 400
Query 439 AAGGCATGATCGATTTCAAGAATGATAAAGGGAAGAGTCCTTATGATGATATGACTGCTT 498
|||||||| | |||||| ||||||||||||||| || | |||||||||||||||||| ||
Sbjct 401 AAGGCATGGTTGATTTCCAGAATGATAAAGGGACGATTTCTTATGATGATATGACTGGTT 460
Query 499 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAATCAGA-GTCAATTCACTACC 557
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 461 TTATTGATACGGTGAAGAACATCATTAGCTTTCAAGCGAAT-AGTCGTCAATTCACTACC 519
Query 558 AAGATCCGTCGCTT-AAAGGACAAGTATCTCC-GAAAGAGGAACAAGGGTGCAGATGAGA 615
|| |||||||| || |||| |||||| | | | |||| |||||||| |||| ||||||||
Sbjct 520 AAAATCCGTCGTTTGAAAG-ACAAGTTTGTACAGAAA-AGGAACAAAGGTGTAGATGAGA 577
Query 616 AATCTTTTGCAAA 628
| ||| | |||||
Sbjct 578 ACTCTCTAGCAAA 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5