BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924157

Length=391
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G56150.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   610    3e-174


> AT1G56150.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr1:21017385-21017939 FORWARD LENGTH=555
Length=555

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 375/396 (95%), Gaps = 5/396 (1%)
 Strand=Plus/Plus

Query  1    CTCCTTAGAGG-TCTTTGGACGATGAAACAGCTAATCCGCCGTCTATCGCGAGTCGCGGA  59
            ||| ||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct  26   CTCTTTAGAGGTTCTTTGGACGATGAAACAACTAATCCGCCGTTTATCGCGTGTCGCGGA  85

Query  60   CTCAACACAGTATAGCCTCCTCCGGTCTGAATCCCAGCGTGGCCGCACCAAGAAGGAGAA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  86   CTCAACACAGTATAGCCTCCTCCGGTCTGAATCCCAGCGTGGCCGCACCAAGAAGGAGAA  145

Query  120  ACACAAATCTTGGGTTCCCGAGGGACACGTGCCTGTCTACGTAGGCCAAGAGATGGAGCG  179
            |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct  146  ACACAAATCTTGGGTTCCCGAGGGGCACGTGCCTGTTTACGTAGGCCACGAGATGGAGCG  205

Query  180  GTTCGTGGTGAATGCGGAGCTTCTCAACCACCCCGTTTTCGTAGCGTTGCTGAAGCGGTC  239
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct  206  GTTCGTGGTGAATGCGGAGCTGCTCAACCACCCCGTTTTCGTAGCGTTGCTGAAGCAGTC  265

Query  240  GGCTCAAGAGTATGGATACGAGCAACAAGGAGTGCTTCGCATCCCTTGCCACGTACTTGT  299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  266  GGCTCAAGAGTATGGATACGAGCAACAAGGAGTGCTTCGCATCCCTTGCCACGTGCTTGT  325

Query  300  GTTCGAACGCATCTTGGAGTCTCTCCGTCTCGGACTCGCCGA--G--TCACATGACCTAA  355
            ||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||| 
Sbjct  326  GTTCGAACGCATCTTGGAGTCTCTCCGTCTCGGACTCGCCGATCGAGTCACATGACCTAC  385

Query  356  ATGGTCTCTTTTGAGACATAAGACGTTTCTAGTGTC  391
            | | ||||||||||||  ||||| ||||||||||||
Sbjct  386  ACGATCTCTTTTGAGATTTAAGAAGTTTCTAGTGTC  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18448263883


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5