BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924164
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54310.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 2244 0.0
> AT1G54310.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:20273567-20275449
FORWARD LENGTH=1365
Length=1365
Score = 2244 bits (1215), Expect = 0.0
Identities = 1297/1338 (97%), Gaps = 0/1338 (0%)
Strand=Plus/Plus
Query 1 GCTGTAGCCAAGAAATGCGCGACGATGGTGATGCTCGGTGTGCTCCAGCTTCCCTGCCGC 60
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 28 GCTGCAGCCAAGAAATGCGGGACGATGGTGATGCTCGGTGTGCTCCAGCTTCCCTGCCGC 87
Query 61 CTCCGTCACTCCCTCTTTTTCTCCTCTTCCCAAATCGCTTCTTCTCGCCCTCAAGGTGTT 120
|||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 88 CTCCATCACTCTCTCTTTTACTCCTCTTCCCAAATTGCTTCTTCTCGCCCTCAAGGTGTT 147
Query 121 GCTAAAGTGGTTCTTAAAAAGGGCAAGACACAGCTCTTCAAAGACGGAAGTCCAATGGTG 180
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 148 GCTAAAGTGGTTCTGAAAAAAGGCAAGACACAGCTCTTCAAAGACGGAAGTCCAATGGTG 207
Query 181 TACAGTGGAGCTGTAGACAGGATCATTGGAAAACCTCCTCCTCAGACCGGAGATGTTGTC 240
|||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 208 TACAGTGGAGCTGTCGACAGGATCATCGGAAAACCACCTCCTCAGACAGGAGATGTTGTC 267
Query 241 ATTGTCGCTGATGGCACTGAGAATCCCATTGGTTGGGGTTTGTATAACTCTGTTTCTATG 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 ATTGTAGCTGATGGCACTGAGAATCCCATTGGTTGGGGTTTGTATAACTCTGTTTCTATG 327
Query 301 TTCTGTGTTCGCCTTATGCAGCTTCAACACGAATCCTCCAGAGATCCTTCTTGTGCATTG 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 328 TTCTGTGTTCGCCTTATGCAGCTTCAACACGAATCCACCAGAGATCCTTCTTGTGCATTG 387
Query 361 AACATTGAGAAGCTTCTCCAAACTAGAATCGCTGAAGCACTTCAGTTGCGAAAGAGTTTG 420
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 388 AACATTGAGAAGCTTCTCCAAACAAGAATCGCTGAAGCAGTTCAGTTGCGAAAGAGTTTG 447
Query 421 GCACTTCCCTCTGCTAATACTAATGCTTATCGTCTTGTCAACAGTGAAGGAGATAGATTG 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GCACTTCCCTCGGCTAATACTAATGCTTATCGTCTTGTCAACAGTGAAGGAGATAGATTG 507
Query 481 TCTGGATTGATTGTGGATGTGTTTGGAGATATAGCTGTGGTAGCATCCTCTGCTGCTTGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TCTGGATTGATTGTGGATGTGTTTGGAGATATAGCTGTGGTAGCATCCTCTGCTGCTTGG 567
Query 541 CTTGAAAAGTACAGGATTGAAGTAGAGAGTTGCTTAAGATCAATTGACGGAATTAATCAT 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 568 CTTGAAAAGTACAGGATTGAAGTGGAGAGTTGCTTAAGATCAATTGACGGAATTAATCAT 627
Query 601 ATAAACTGGAGACCGTCTCTTGATGTTCTTAAAGAAGATGGATTTGATATCTCAAGTCTG 660
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 628 ATAAACTGGAGACCTTCTCTTGATGTTCTTAAAGAAGATGGTTTTGACATCTCAAGTCTG 687
Query 661 AAACAAACACAATCATCTACTCTCCCACAGAGATCAATGGTTGTGGAAAATGGGATCTCC 720
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 AAACAGACACAATCATCTACTCTCCCACAGAGATCAATGGTTGTGGAAAATGGGATCTCA 747
Query 721 TACGCAATTTCGCTAGAGGGACAGAAGACAGGGTTCTACACAGATCAGCGCGAAAACCGT 780
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 748 TACGCAATTTCGCTAGAGGGACAGAAGACAGGGTTCTACACGGATCAGCGCGAAAACCGT 807
Query 781 CACTTCGTATCAACCATCTCTGCTGGTAAAAGAGTTCTTGATCTTTGCTGCTATAGTGGT 840
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 CACTTCATATCAACCATCTCTGCTGGTAAAAGAGTTCTTGATCTTTGCTGCTATAGTGGT 867
Query 841 GGATTTGCACTGAATGCAGCGAGAGGAGGTGCTACCAGTGTTATCGGAATTGATTCATCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GGATTTGCACTGAATGCAGCGAGAGGAGGTGCTACCAGTGTTATCGGAATTGATTCATCT 927
Query 901 GTACCTGCTTTGGAGCTCGCCAGAGAGAATGTTATCCTTAACAATATGGATCCAGAGAAG 960
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 928 TTACCTGCTTTGGAGCTCGCCAGAGAGAATGTAATCCTCAACAATATGGATCCAGAGAAG 987
Query 961 GTTGTTTTCTTTAAACAAGATTCAACAGAATTCATGAAGGGTGCTCTGTCAAGAGAAGAG 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 988 GTTGTTTTCTTTAAACAAGATTCAACAGAATTCATGAAGGGTGCACTGTCAAGAGAAGAG 1047
Query 1021 ACATGGGACATCGTGATCCTAGACCCTCCTAAGCTAGCTCCGCGGAAAAAGGTTTTGCAC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 ACATGGGACATCGTGATCCTAGACCCTCCTAAGCTAGCTCCGCGGAAAAAGGTTTTGCAC 1107
Query 1081 AACGCAGCAGGAATGTACAGAAATCTCAACTCGTTGGCAATGCGATTGACAACGAGTGGC 1140
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1108 AACGCTTCAGGAATGTACAGAAATCTCAACTCGTTGGCAATGCGATTGACAAGGAGTGGC 1167
Query 1141 GGTCTTATGATGACATGCTCATGTTCAGGGGCTATGACACAGAGTGGGAAGTTCTTGGGG 1200
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1168 GGTCTTATGATGACATGCTCATGTTCAGGGGCAATGACACAGAGCGGGAAGTTCTTGGGG 1227
Query 1201 ATTCTTCAGAGCGCTGCAGCAATGGCGGGAAGGAAGATCACAGTGGTGAGGGAGGCAGGA 1260
|| |||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||
Sbjct 1228 ATACTTCAGAGTGCTGCAGCAATGTCAGGAAGGAAGATCACAGTGGTGCGGGAGGCAGGA 1287
Query 1261 GCTGCGTCTGACCACCCACTCGACCCATCTTACCCTCAAGGCCAATATCTCTCCAATCTT 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1288 GCTGCGTCTGACCACCCACTCGACCCATCTTACCCTCAAGGCCAATATCTCTCCAACCTT 1347
Query 1321 CTGCTTCGGGTGCTTTGA 1338
|||||||||||||| |||
Sbjct 1348 CTGCTTCGGGTGCTGTGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5