BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924165
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54320.1 | Symbols: | LEM3 (ligand-effect modulator 3) fami... 1781 0.0
AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3... 1033 0.0
> AT1G54320.1 | Symbols: | LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein | chr1:20275534-20277957
REVERSE LENGTH=1412
Length=1412
Score = 1781 bits (964), Expect = 0.0
Identities = 1034/1069 (97%), Gaps = 0/1069 (0%)
Strand=Plus/Plus
Query 21 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CCATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCG 222
Query 81 CCGCCAGGAAGAATTCGAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 140
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCGCTAGGAAGAATTCAAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAG 282
Query 141 CTTGCAAGCCAATTCTCACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 200
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 CTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTA 342
Query 201 TCTTTATTCCCCTTGGAGTTATCTCTCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 260
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 343 TCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTG 402
Query 261 ACCGGTATGATACTGAATGCATTCCGGAACCTGCTAGGACTAACAAGATTGCATATATTC 320
| |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 403 ATCGGTATGATACTGAGTGCATTCCGGCACCTGCTAGGACTAACAAGGTTGCATATATTC 462
Query 321 AAGGAGATGGAGATAAAGTTTGTACCCGGGATCTTAAAGTGACAAAGCGTATGAAACAGC 380
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 463 AAGGAGATGGAGATAAAGTTTGTAACCGGGATCTTAAAGTGACAAAGCGTATGAAGCAAC 522
Query 381 CTGTCTATGTTTATTACCAGCTTGAGAACTTCTACCAGAATCACCGAAGGTATGTAAAAA 440
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 523 CTATCTATGTTTATTACCAACTTGAGAATTTCTACCAGAATCACCGAAGGTATGTAAAAA 582
Query 441 GCCGAAGTGATTCACAGTTGAGAAGTCCAAAATACGAGAATCAAATAAGCGCATGCAAGC 500
| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 583 GTCGAAGTGATTCACAGTTGAGAAGTACAAAATACGAGAATCAAATAAGTGCATGCAAGC 642
Query 501 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTCT 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 643 CTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTTT 702
Query 561 TTAATGACACATACGCCTTATCAAGAAACAATGTAAGCCTAGCTGTAAACAAAAAAGGCA 620
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 703 TTAACGACACATACGCGTTATCAAGAAACAATGTAAGCCTAGCTGTGAACAAAAAAGGCA 762
Query 621 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTC 822
Query 681 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAAAATACCGCTTAGTGAACAAG 740
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 823 AAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAGAATACCGCTTAGTGAACAAG 882
Query 741 AAGATCTCATCGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 800
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AAGATCTCATTGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAA 942
Query 801 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTACGCTGAAGAACAACTACA 860
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 943 AGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTAAGCTGAACAACAACTACA 1002
Query 861 ACACTTACAGTTTCAATGGGAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 920
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 ACACGTACAGCTTCAATGGAAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTG 1062
Query 921 GGAAGAATGATTTCCTCGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCTTTTTGG 980
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1063 GGAAGAACGATTTCCTTGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCATTTTGG 1122
Query 981 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGACTTGGAGATCCATCCTACT 1040
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1123 CCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGTCTTGGAGATCCGTCCTACT 1182
Query 1041 TGTCATGGAATAGAAATCCCGGAGGTCGGTAACAAGCTTGGAGAGGGAG 1089
||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1183 TGTCATGGAATAGAAATCCTGGAGGTCGGTAACAAGCTTGGAAAGGGAG 1231
> AT3G12740.1 | Symbols: ALIS1 | ALA-interacting subunit 1 | chr3:4049515-4051775
FORWARD LENGTH=1491
Length=1491
Score = 1033 bits (559), Expect = 0.0
Identities = 898/1060 (85%), Gaps = 30/1060 (3%)
Strand=Plus/Plus
Query 28 TTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCGCCGCCAG 87
||| || ||| | || || ||||| | || ||||||||| |||||||||||||||| |
Sbjct 233 TTCTAACACGCCATCTTCTAGCGCCGCCGCTGCCGGATCGATAGATTCTTCCGCCGCCCG 292
Query 88 GAAG-AATTCGAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAGCTTGCA 146
| || ||||| ||| |||||||||||||||| || || |||||||||||||| |||||||
Sbjct 293 G-AGAAATTCCAAGAGACCCAAGTATTCGAAATTTACTCAGCAGGAGCTTCCTGCTTGCA 351
Query 147 AGCCAATTCTCACCCCTGGTTGGGTCATTTCGACATTTTTGAT-AGTCAGTGTTATCTTT 205
| |||||||| || ||||||||||| ||||| || |||||||| | | |||||||||||
Sbjct 352 AACCAATTCTTACGCCTGGTTGGGTGATTTCAACGTTTTTGATCA-TTAGTGTTATCTTC 410
Query 206 ATTCCCCTTGGAGTTATCTCTCT-TTTCGCTTCCCAGGATGTTGTGGAGATCGTTGACCG 264
||||||||||| ||||| ||||| ||| ||||| ||||||||||| ||||||||||| ||
Sbjct 411 ATTCCCCTTGGTGTTATTTCTCTCTTT-GCTTCTCAGGATGTTGTTGAGATCGTTGATCG 469
Query 265 GTATGATACTGAATGCATTCCGGAACCTGCTAGGACTAACAAGATTGCATATATTCAAGG 324
|||||||| || |||||| || | ||| |||| |||||||| ||||||| ||||||||
Sbjct 470 GTATGATAGTGCATGCATACCTCTATCTGATAGGGCTAACAAGGTTGCATACATTCAAGG 529
Query 325 AGA-TGGAGATAAAGT-TTGTACCCGGGATC-TTAA-AGTGACAAAGCGTATGAAACAGC 380
| | |||| ||||| | |||||||| ||| | ||| ||| | ||||||||||| ||||
Sbjct 530 A-ACTGGAAATAAA-TCTTGTACCC-GGA-CGCTAATTGTGCCTAAGCGTATGAAGCAGC 585
Query 381 CTGTCTATGTTTATTACCAGCTTGAGAACTTCTACCAGAATCACCGAAGGTATGTAAAAA 440
|| |||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 586 CTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAAA 645
Query 441 GCCGAAGTGATTCACAGTTGAGAAGTCCAAAATACGAGAATCAAATA-AGCGCATGCAAG 499
||||||||||||| || ||||||||| ||| | |||||||||||| | ||||||||||
Sbjct 646 GCCGAAGTGATTCGCAATTGAGAAGTGTGAAAGATGAGAATCAAATAGA-CGCATGCAAG 704
Query 500 CCTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTC 559
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 705 CCTGAGGATGATTTTGGTGGGCAGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTC 764
Query 560 TTTAATGACACATACGC-CTTATCAAGAAACAATGTAAGCCT-AGCTGTAAACAAAAAAG 617
|||||||||||||||| || ||||||||| || | | | | | |||||||| ||||
Sbjct 765 TTTAATGACACATACGTTCT-ATCAAGAAATAACC-AGGGTTTAACGGTAAACAAGAAAG 822
Query 618 GCATTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATT 677
| |||||||||||||| ||||||||||||||||||||||| || || || |||||||| |
Sbjct 823 GAATTGCATGGAAGAGCGACAAGGAACACAAGTTTGGGAAAAATGTGTTTCCCAAGAACT 882
Query 678 TTCAAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAA-AATACCGCTT-AGTGA 735
|||| ||||| ||| |||| |||||||| | | |||||||||| || ||| || |||||
Sbjct 883 TTCAGAAGGGCAATCTCACTGGTGGTGCCAGTCTAGATCCAAATAA-ACCA-TTGAGTGA 940
Query 736 ACAAGAAGATCTCATCGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTT-T 794
||||| ||||| |||||||||||||| || || || |||||||||||||||||| || |
Sbjct 941 TCAAGAGGATCTGATCGTGTGGATGAGGACTGCTGCGTTGCCAACATTTAGAAAA-TTAT 999
Query 795 ACGGAAAGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTACGCTGAAGAACA 854
|||| ||||||||| |||| | |||| |||||| | |||||| || || ||| ||||||
Sbjct 1000 ACGGGAAGATAGAGAGTGACTTGGAGAAGGGTGAGAACATACAAGTGACTCTGCAGAACA 1059
Query 855 ACTACAACACTTACAGTTTCAATGGGAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGC 914
|||||||||| |||||||||| ||||||||||||||||||| ||||||| || |||||||
Sbjct 1060 ACTACAACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGC 1119
Query 915 TGGGTGGGAAGAATGATTTCCTCGGCATTGCTTACCTGACAGTTGGCGGGA-TCTGTTTC 973
| ||||| ||||| || |||||||||||||||||||| || ||||| |||| ||||||||
Sbjct 1120 TTGGTGGAAAGAACGACTTCCTCGGCATTGCTTACCTCACCGTTGG-GGGAATCTGTTTC 1178
Query 974 TTTTTGGCCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGACTTGGAGATCC- 1032
| ||||| || ||||||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 1179 GTCTTGGCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCCT 1238
Query 1033 ATCCTACTTGTCATGGAATAGAAATCCCGGAGGTCGGTAA 1072
| |||||||||| ||||| |||| ||| |||||||| |||
Sbjct 1239 A-CCTACTTGTCGTGGAACAGAATTCCTGGAGGTCGTTAA 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5