BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924173
Length=1342
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48930.1 | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/qui... 1812 0.0
> AT5G48930.1 | Symbols: HCT | hydroxycinnamoyl-CoA shikimate/quinate
hydroxycinnamoyl transferase | chr5:19836299-19838162
REVERSE LENGTH=1727
Length=1727
Score = 1812 bits (981), Expect = 0.0
Identities = 1204/1315 (92%), Gaps = 2/1315 (0%)
Strand=Plus/Plus
Query 20 TATGAAAATTAACATCCGAGATTCCACCATGGTCCGGCCTGCCGCCGAGACGCCTATCAC 79
|||||||||||||||| |||||||||||||||||||||||||| ||||||| || |||||
Sbjct 70 TATGAAAATTAACATCAGAGATTCCACCATGGTCCGGCCTGCCACCGAGACACCAATCAC 129
Query 80 TAATCTTTGGAACTCCAACGTTGACCTTGTTATCCCCAGATTCCACACCCCCAGTGTCTA 139
||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||
Sbjct 130 TAATCTTTGGAACTCCAACGTCGACCTTGTCATCCCCAGATTCCATACCCCTAGTGTCTA 189
Query 140 CTTCTACAGACCCACCGGTGCCTCCAATTTCTTCGACCCTCAGATCATGAAGGACGCTCT 199
|||||||||||||||||| || ||||||||||| ||||||||| |||||||||| |||||
Sbjct 190 CTTCTACAGACCCACCGGCGCTTCCAATTTCTTTGACCCTCAGGTCATGAAGGAAGCTCT 249
Query 200 CTCCAAGGCCCTCGTCCCCTTTTACCCCATGGCCGGTCGCTTGAAGAGAGACGATGATGG 259
||||| ||||| ||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 250 TTCCAAAGCCCTTGTCCCTTTTTACCCTATGGCTGGTCGCTTGAAGAGAGACGATGATGG 309
Query 260 TCGTATCGAGATTGATTGCAACGGCGCCGGTGTTCTCTTCGTCGTTGCCGATACTCCCTC 319
|||||| ||||| ||||| ||||| || |||||||||||||| || || |||||||| ||
Sbjct 310 TCGTATTGAGATCGATTGTAACGGTGCTGGTGTTCTCTTCGTTGTGGCTGATACTCCTTC 369
Query 320 TGTCATCGATGATTTTGGTGACTTCGCTCCTACCCTCAATCTCCGCCAGCTTATTCCCGA 379
||| ||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||
Sbjct 370 TGTTATCGATGATTTTGGTGATTTTGCTCCTACCCTTAATCTCCGTCAGCTTATTCCCGA 429
Query 380 TGTTGATCACTCCGCCGGCATCCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACCTTCTT 439
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 430 AGTTGATCACTCCGCTGGCATTCACTCTTTCCCGCTTCTCGTTTTGCAGGTGACTTTCTT 489
Query 440 TAAATGCGGGGGAGCTTCCCTTGGGGTTGGTATGCAACACCACGCTGCAGATGGTTTCTC 499
|||||| ||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 490 TAAATGTGGGGGAGCTTCACTTGGGGTTGGGATGCAACATCACGCGGCAGATGGTTTCTC 549
Query 500 TGGTCTCCACTTTATCAACACATGGTCTGATATGGCCCGTGGTCTTGACCTTACCATTCC 559
|||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 550 TGGTCTTCATTTTATCAACACATGGTCTGATATGGCTCGTGGTCTTGACCTAACCATTCC 609
Query 560 ACCCTTCATTGATCGAACCCTCCTCCGCGCTCGGGACCCGCCTCAGCCTGCTTTTCATCA 619
||| |||||||||||||| |||||||| ||| |||||||||| |||||||||||||||||
Sbjct 610 ACCTTTCATTGATCGAACACTCCTCCGAGCTAGGGACCCGCCACAGCCTGCTTTTCATCA 669
Query 620 TGTTGAATATCAGCCTGCCCCCAGTATGAGGATCCCTCTTGATCCGTCCAAATCAGGCCC 679
|||||||||||||||||| || ||||||| ||| |||||||||||||| |||||||| ||
Sbjct 670 TGTTGAATATCAGCCTGCACCAAGTATGAAGATACCTCTTGATCCGTCTAAATCAGGACC 729
Query 680 TGACAATACCACCGTCTCTATTTTCAAATTATCACGCGACCAGCTTGTTGCTCTCAAGGC 739
||| |||||||| |||||||| ||||||||| |||| ||||||||||||||||| |||||
Sbjct 730 TGAGAATACCACTGTCTCTATATTCAAATTAACACGAGACCAGCTTGTTGCTCTTAAGGC 789
Query 740 TAAATCCAAGGAGGATGGGAACATTGTAAGTTACAGCTCATACGAGATGCTGGCAGGCCA 799
|||||||||||||||||||||| ||| || |||||||||||||||||| ||||||| ||
Sbjct 790 GAAATCCAAGGAGGATGGGAACACTGTCAGCTACAGCTCATACGAGATGTTGGCAGGGCA 849
Query 800 CGTGTGGAGATCAGTGGGCAAGGCGCGCGGACTTCCAGACGACCAAGAGACCAAATTGTA 859
||||||||||||||||| |||||||| || |||||| ||||||||||||| ||| ||||
Sbjct 850 TGTGTGGAGATCAGTGGGAAAGGCGCGAGGGCTTCCAAACGACCAAGAGACGAAACTGTA 909
Query 860 TATTGCAACTGATGGAAGGTCCAGACTGCACCCGCAGCTTCCCCCTGGTTACTTTGGCAA 919
|||||||||||||||||||| ||||| | |||||||| || |||||||||||||| ||
Sbjct 910 CATTGCAACTGATGGAAGGTCTAGACTACGTCCGCAGCTGCCTCCTGGTTACTTTGGGAA 969
Query 920 TGTTATATTCACCGCGACACCATTGGCCGTTGCAGGGGATCTGCTATCAAAGCCAACGTG 979
||| |||||||| || ||||||||||| |||||||||||| || |||| |||||||| ||
Sbjct 970 TGTGATATTCACTGCAACACCATTGGCTGTTGCAGGGGATTTGTTATCTAAGCCAACATG 1029
Query 980 GTATGCTGCAGGACTTATTCATGATGTT-TTGGTTCGCATGGACGATAACTATCTGAGGT 1038
|||||||||||||| ||||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 1030 GTATGCTGCAGGACAGATTCATGAT-TTCTTGGTTCGTATGGATGATAACTATCTGAGGT 1088
Query 1039 CTGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1098
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 CAGCTCTTGACTACCTGGAGATGCAGCCTGATCTGTCAGCCCTTGTCCGCGGTGCACATA 1148
Query 1099 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTCAGATTACCCATTTATGATGCAG 1158
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1149 CCTACAAGTGCCCAAATTTGGGAATCACAAGCTGGGTTAGATTACCTATTTATGATGCAG 1208
Query 1159 ACTTTGGTTGGGGTCGTCCCATATTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1218
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1209 ACTTTGGTTGGGGTCGTCCTATCTTTATGGGACCTGGTGGAATTCCATACGAGGGTTTGT 1268
Query 1219 CGTTTGTGCTACCAAGTCCTACAAATGATGGCAGCCTATCCGTGGCCATTGCCCTCCAAT 1278
| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 1269 CTTTTGTGCTACCAAGTCCTACTAATGATGGCAGCTTATCCGTTGCCATTGCCCTCCAAT 1328
Query 1279 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTACGAGATATGAGAGAGATAAGC 1333
||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 1329 CTGAACACATGAAACTGTTTGAGAAGTTTTTGTTTGAGATATGAGAGCGTTAAGC 1383
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66063917220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5