BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924174
Length=278
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03970.1 | Symbols: GBF4 | G-box binding factor 4 | chr1:101... 374 3e-103
AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase 2 ... 374 3e-103
AT5G44080.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 220 4e-57
> AT1G03970.1 | Symbols: GBF4 | G-box binding factor 4 | chr1:1018100-1019247
FORWARD LENGTH=1148
Length=1148
Score = 374 bits (202), Expect = 3e-103
Identities = 227/239 (95%), Gaps = 2/239 (1%)
Strand=Plus/Plus
Query 2 GAGAGGAAAGAGAGGGAGAGTGATGACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACA 61
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 650 GAGAGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAGAGACA 709
Query 62 GAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTTA 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 710 GAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAGGCTTA 769
Query 122 TCAAGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGG-GAATGAGAAGCTTTTGA 180
||| ||||||||||||||||||||||| || |||||||| || ||||||| |||||||||
Sbjct 770 TCAGGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGA-GGAGAATGAGCAGCTTTTGA 828
Query 181 AGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGACGTTTTGATTCCG 239
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 829 AGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATTCCG 887
> AT1G03980.1 | Symbols: ATPCS2, PCS2 | phytochelatin synthase
2 | chr1:1018570-1022108 REVERSE LENGTH=2337
Length=2337
Score = 374 bits (202), Expect = 3e-103
Identities = 227/239 (95%), Gaps = 2/239 (1%)
Strand=Plus/Minus
Query 2 GAGAGGAAAGAGAGGGAGAGTGATGACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACA 61
|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||
Sbjct 2158 GAGAGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAGAGACA 2099
Query 62 GAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTTA 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2098 GAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAGGCTTA 2039
Query 122 TCAAGTTGAGTTAGAGACTTTGGCTGCGAAATTAGAGGAAGG-GAATGAGAAGCTTTTGA 180
||| ||||||||||||||||||||||| || |||||||| || ||||||| |||||||||
Sbjct 2038 TCAGGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGA-GGAGAATGAGCAGCTTTTGA 1980
Query 181 AGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGACGTTTTGATTCCG 239
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1979 AGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATTCCG 1921
> AT5G44080.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr5:17738652-17739873 REVERSE
LENGTH=1222
Length=1222
Score = 220 bits (119), Expect = 4e-57
Identities = 207/247 (84%), Gaps = 15/247 (6%)
Strand=Plus/Plus
Query 3 AGAGGAAAGAGAGGGAGAGTGAT-GACGAAGGCAATGGATAAAGCTGCAGCTCAAAGACA 61
||||| ||||||| ||||||||| | | || || |||||||||| || || || |||||
Sbjct 785 AGAGGGAAGAGAGCGAGAGTGATGGTTG-AGCCATTGGATAAAGCAGCTGCACAGAGACA 843
Query 62 GAAG-AGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAAGCTT 120
| || |||||||| ||||| |||||||| || ||||||||| ||||||||||||||||||
Sbjct 844 G-AGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTT 902
Query 121 ATCAAGTTGAGTTAGA-GACTTTGGCTGCGAAA-TTAGAGGAAGGGAATGAGAAGCTTT- 177
|||||||||||||||| | ||||||||||||| || ||||||| ||||||| |||||
Sbjct 903 ATCAAGTTGAGTTAGAAG-CTTTGGCTGCGAAGCTT-GAGGAAGAGAATGAGTTGCTTTC 960
Query 178 TGAAGGAGATTGAAGAGA-GCACTAAAGAGAGATACAAGAAGCTCATGGACGTTT-TGAT 235
| |||||||||||||| | | | |||||||||||| ||||| | ||||| |||| ||||
Sbjct 961 T-AAGGAGATTGAAGATAAG-AGGAAAGAGAGATACCAGAAGTTGATGGA-GTTTGTGAT 1017
Query 236 TCC-GTT 241
||| |||
Sbjct 1018 TCCTGTT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12768008246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5