BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924187

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   193    8e-49
  AT4G32000.2 | Symbols:  | Protein kinase superfamily protein | ...  76.8    8e-14


> AT5G09580.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G53345.1); 
Has 53 Blast hits to 53 proteins in 12 species: Archae - 0; 
Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 50; Viruses 
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:2972639-2974776 
FORWARD LENGTH=1520
Length=1520

 Score =  193 bits (104),  Expect = 8e-49
 Identities = 147/166 (89%), Gaps = 9/166 (5%)
 Strand=Plus/Plus

Query  1    CTAAGTGTAGAAGACAAAACAT--GGTTGAATCGGTTCTTGATTACATTGAGGATATCGA  58
            |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  619  CTAAGTGTAGAAGACAAAAC-TCGGGTTGAATCGGTTCTTGATTACATTGAGGATATCGA  677

Query  59   TCTTCGACG-TCGGATGTTACCAGATATCAAAGCTTCCAGCTTTGCTCTTAAGGACTGGC  117
            |||||| || | |||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct  678  TCTTCGGCGAT-GGATGTTACCAGATATCAAAGCTTTCAGCTTTGGTCTTAAGGATTGGC  736

Query  118  -CTTTAAGGATCAATTATATTA-CTAATCCGTACATTTATGAACAG  161
             ||  ||||||||||| ||| | | ||||| ||||| || ||||||
Sbjct  737  GCTC-AAGGATCAATTGTATCATC-AATCCTTACATGTACGAACAG  780


> AT4G32000.2 | Symbols:  | Protein kinase superfamily protein 
| chr4:15473971-15476685 REVERSE LENGTH=1402
Length=1402

 Score = 76.8 bits (41),  Expect = 8e-14
 Identities = 43/44 (98%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  167  TTTAACATGGCACATGCGGATGAAGATTGCTCTTGATACAACAA  210
            |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  699  TTTAACATGGCACATGCGGATGAAGATTGCTCTTGATACAGCAA  742



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5