BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924200

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54470.2 | Symbols: RPP27 | RNI-like superfamily protein | c...   411    3e-114


> AT1G54470.2 | Symbols: RPP27 | RNI-like superfamily protein | 
chr1:20344698-20349192 FORWARD LENGTH=3074
Length=3074

 Score =  411 bits (222),  Expect = 3e-114
 Identities = 295/330 (89%), Gaps = 6/330 (2%)
 Strand=Plus/Plus

Query  1    TTT-AAGCTTTCAGAC-AAAAC--AATGACGACTACTTTTGTCCTTTTTCTTCTTCTCCT  56
            ||| |||||||||||| |||||  ||||| ||||| ||||||  || | |||||||||||
Sbjct  16   TTTCAAGCTTTCAGACAAAAACAAAATGAAGACTAATTTTGTTATTCTACTTCTTCTCCT  75

Query  57   CTGTGTTTTTGCGATCAACCCTAGTCAACAAGAAGAGATCAATCAACAGAATCCAGGGAT  116
            ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct  76   CTGTGTTTTTGCGATCAGCCCTAGTCAACAAGAAGAGATCAATCAACATAATCCAGGGAT  135

Query  117  ATATCATCAAAAGTTGCTATACAAGGTCCAACAATGGAGAACAGCTTTGAAAGAATCAAA  176
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  136  ATATCATCAAAAGCTGCTATACAAGGTCCAACAATGGAGAACATCTTTGAAAGAATCAAA  195

Query  177  TGCTGCAGAACTCAAGATATCTTCAGCAATCATTGTAGTTGGAGGGTTATGCTTCCTTGT  236
            | ||| |||||||||| |||||| ||||  |||||| | ||||| ||||| |||||||| 
Sbjct  196  TTCTGTAGAACTCAAGCTATCTTTAGCAGCCATTGTGGCTGGAGTGTTATACTTCCTTGC  255

Query  237  TGCCTTGATCTCGAGCGCATGTGTAATCGGCGGTAGAGGTTTATTTATTCCAATCATGAC  296
            |||||| |||||||||||||||| ||||||| || |||||||||| |||||||||| |||
Sbjct  256  TGCCTTAATCTCGAGCGCATGTGGAATCGGCAGTGGAGGTTTATTCATTCCAATCACGAC  315

Query  297  TAC-AGCTGCACGGCTAGACTTGAAAACAG  325
            | | || | |||||||||||||||||||||
Sbjct  316  T-CTAGTTTCACGGCTAGACTTGAAAACAG  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17895318644


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5