BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924207

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protei...   582    7e-166


> AT1G54530.1 | Symbols:  | Calcium-binding EF hand family protein 
| chr1:20366505-20366888 FORWARD LENGTH=384
Length=384

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 363/386 (94%), Gaps = 4/386 (1%)
 Strand=Plus/Plus

Query  22   ATGATCGAAACAGTATTCACAAGCAAAACTCTCATCGGATTCATCTCCGACACCAAATCA  81
            ||||||||||||||| |||||||||||||||| ||||||||| | ||||| || ||||||
Sbjct  1    ATGATCGAAACAGTAATCACAAGCAAAACTCTAATCGGATTCCTTTCCGATACAAAATCA  60

Query  82   TTCGAATCCATAACCGACGACTATTTCCAGATTCTAGATCTAGACAAAAACGGAATGTTG  141
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTCGAATCCATAACCAACGACTATTTCCAGATTCTAGATCTAGACAAAAACGGAATGTTG  120

Query  142  TCTCCGTCAGAGCTTCGTCAAGGTCTCAACCATGTTGTGGCGGTGGAATCTGAAGTCGCT  201
            ||||| || ||||||||||||||||||||| |||| || || ||||||||||| ||||||
Sbjct  121  TCTCCATCGGAGCTTCGTCAAGGTCTCAACAATGTGGTAGCTGTGGAATCTGAGGTCGCT  180

Query  202  CCTGGAGAAGAGACCGATAACGTGTACAATGCGATTTTCGAGAGATTTGGTGAAGATTTG  261
            |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  181  CCTGGAGACGAGACCGATAACGTGTACAATGCGATTTTCGAGAGATTCGGTGAAGATTTG  240

Query  262  GTTCCAGAGAAATTT-AGGGATTTGATTGCAGAGATTTTGACGGCGATGGCGAGAGGAAT  320
            |||||| | |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  241  GTTCCAAA-AAATTTTAGGGATTTGATTGCAGAGATTTTGACGGCGATGGCGAGAGGTAT  299

Query  321  CGGAAACTCGCCGGTGATTATGGTTGTGCATAATGATGGTTTGATTATGAAAGCTGTTCT  380
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  300  CGGAAACTCGCCGGTGATTATGGTTGTGCATAATGATGGATTGATTATGAAAGCTGTTCT  359

Query  381  TCATGAATCTGAAA-AAGGCAAGTGA  405
            |||||||||| ||| |||||||||||
Sbjct  360  TCATGAATCT-AAACAAGGCAAGTGA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20157367349


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5