BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924208
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54540.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1168 0.0
> AT1G54540.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:20367572-20368434
REVERSE LENGTH=863
Length=863
Score = 1168 bits (632), Expect = 0.0
Identities = 714/754 (95%), Gaps = 4/754 (1%)
Strand=Plus/Plus
Query 9 AAGTTGTAGATCAATGGGAGATCAACAAAAAGTTCACCCGGTTCTTCAAATGGAAGCCAA 68
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AAGTTGTAGATCCATGGGAGATCAACAAAAAATTCACCCGGTTCTTCAAATGGAAGCCAA 60
Query 69 CAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGACTTGCTTCCGGTTCAACGGCC 128
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGTCTTGCTTCCGGTTCAACGGCC 120
Query 129 GATTCTGCCTCCTGTTATGCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTG 188
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCCGCCTCCTGTTATTCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTG 180
Query 189 GGTGTTAAGCCTTCTAGTCCTTGCAATGATCGCGTTAGGGATTGCGGTTGCGGTTGTATA 248
||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 181 GGTGTTAAGCCTTCTAGTCATTGCATTGATCGCGTTAGCAATTGCGGTTGCGGTTGTATA 240
Query 249 CTTTGTTTTCCACCCTAAACTCCCGCGATACGAAGTAAACAGTTTACGAGTTACCAACCT 308
||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 241 CTTTGTTTTCCACCCTAAACTCCCGAGTTACGAAGTCAACAGTTTACGAGTTACCAACCT 300
Query 309 TGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTCAGAGTCGAGATCACAGCTCGTAA 368
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 301 TGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTTAAAGTCGAGATCACAGCTCGTAA 360
Query 369 TCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGCCATATCGGTGTGTGGTACGA 428
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 TCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGTCATATCGGTGTGTGGTACGA 420
Query 429 CAAGACAAAGCTATGCGAGGGCCCGATACCGAGGTTTTATCAAGGGCATCGCAATGTCAC 488
||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 421 CAAGACAAAGCTATGTGAAGGCCCTATACCGAGGTTTTATCAAGGACATCGCAATGTAAC 480
Query 489 TAAACTGAATGTCGCTTTAACGGGAAGAGCACAATACGGGAACACTGTCTTGGCGGCATT 548
|||||| ||||| ||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 481 TAAACTAAATGTGGCTCTAACGGGAAGAGCGCAATATGGGAACACTGTCTTGGCGGCATT 540
Query 549 GCAGCAGCAACAACAGACAGGACGTGTGCCGTTAGATCTCAAAGTAGA-TGCACCTGTTG 607
||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||| |
Sbjct 541 GCAGCAGCAACAACAAACAGGACGTGTACCGTTAGATCTTAAAGT-GAATGCACCTGTCG 599
Query 608 CCGTAAAACTCGGGAAAT-TGAAGATGAAGAAGATTCGGATATTGGGGAATTGTAAACTT 666
|| | |||||||| |||| |||||||||||||||||||||||||||||| |||||| |||
Sbjct 600 CCATCAAACTCGG-AAATCTGAAGATGAAGAAGATTCGGATATTGGGGAGTTGTAAGCTT 658
Query 667 GTTGTTGATAGTTTATCAACAAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTT 726
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTTGTTGATAGTTTATCAACGAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTT 718
Query 727 AAGGCCAAACTCTGAGATGGTCTTAGTTCTAGGC 760
||||||||||||||||||| |||||| |||||||
Sbjct 719 AAGGCCAAACTCTGAGATGTTCTTAGATCTAGGC 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36972332192
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5