BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924232

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28285.1 | Symbols:  | transposable element gene | chr5:1026...   311    4e-84
  AT3G42280.1 | Symbols:  | transposable element gene | chr3:1444...   122    2e-27


> AT5G28285.1 | Symbols:  | transposable element gene | chr5:10264891-10268620 
REVERSE LENGTH=3730
Length=3730

 Score =  311 bits (168),  Expect = 4e-84
 Identities = 194/207 (94%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  1     TTTTTGTTTGTCAATTATAGATGAGCCCACCAATAAACATTGGCGGTCGTTTATATGGAC  60
             ||||||||||||||||||||||| | ||| |||||| |||| |||||||||| |||||||
Sbjct  2215  TTTTTGTTTGTCAATTATAGATGCGTCCAACAATAACCATTAGCGGTCGTTTTTATGGAC  2274

Query  61    AAGGATCGAGTTCTCAAGCTGTTGGTTCTCAAAGACATTTGTCTCAAACTGCAAACGCTG  120
             ||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||| ||
Sbjct  2275  AAGGATCGAGTTCTCAAGCTGCTGGTTATGAAAGACCTTTGTCTCAAACTGCAAACGTTG  2334

Query  121   AATCAAGTGAGCAGGGAGAAGAAATTGCACCTGTGCAATATGATATTCGAGTGCTTCACC  180
             |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  2335  AATCAAGTGAGCAGAGAGAAGAAATTGCACATGTGCAATATGATATTCGAGTGCTTCACC  2394

Query  181   CCTCTCGAAGAAATGGAGCTAAATGGT  207
             |||||||||||||||||||||||||||
Sbjct  2395  CCTCTCGAAGAAATGGAGCTAAATGGT  2421


 Score =  215 bits (116),  Expect = 3e-55
 Identities = 125/129 (97%), Gaps = 2/129 (2%)
 Strand=Plus/Plus

Query  205   GGTTCAAAAACAACACCGAAGTGTCAACGCGTGTTAGAAAAATCATTGAAGGGTGTTTTC  264
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  2502  GGTTCAAAAACAACACCGAAGTATCAACGCGTGTTAGAAAAATCATTGAAGGGTGTTTTT  2561

Query  265   AGGGACCTTGGTATAGCTGGA-AAAATGTGCCGCAATTTTATAGAGATGCATGGTTTACA  323
             ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct  2562  AGGGACCTTGGTATAGCTGGAGAAAA-GTGCCGCAATTTTATAGAGATGCATGGTTTACA  2620

Query  324   ACGTTTAAG  332
             |||||||||
Sbjct  2621  ACGTTTAAG  2629


 Score =  128 bits (69),  Expect = 4e-29
 Identities = 71/72 (99%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  331   AGATATATTTTAGACAAGGTTTGAGTTGGATGCCTCGATTGAGCATCTAGTTAAAGCCAA  390
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  2695  AGATATATTTTAGACAAGGTTTGAGTGGGATGCCTCGATTGAGCATCTAGTTAAAGCCAA  2754

Query  391   CTTTGATGCCCT  402
             ||||||||||||
Sbjct  2755  CTTTGATGCCCT  2766


> AT3G42280.1 | Symbols:  | transposable element gene | chr3:14447818-14448962 
REVERSE LENGTH=1145
Length=1145

 Score =  122 bits (66),  Expect = 2e-27
 Identities = 70/72 (97%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  331  AGATATATTTTAGACAAGGTTTGAGTTGGATGCCTCGATTGAGCATCTAGTTAAAGCCAA  390
            |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  308  AGATATATTTTAGACAAGGTTTGAGTGGGATGCCTCGATTGAGAATCTAGTTAAAGCCAA  367

Query  391  CTTTGATGCCCT  402
            ||||||||||||
Sbjct  368  CTTTGATGCCCT  379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5