BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924246

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66710.1 | Symbols:  | Protein kinase superfamily protein | ...   235    2e-61


> AT5G66710.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:26636609-26638794 FORWARD LENGTH=1448
Length=1448

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 155/168 (92%), Gaps = 3/168 (2%)
 Strand=Plus/Plus

Query  125  CATTGAGCAGAAGAAGAAGTTTCAAAGAAAGGTTTTGCTGCTTTCCAAGTTTCA-ACATG  183
            ||||||||||| |||||||||||| ||| ||||||||||||||||||||||| | |||||
Sbjct  330  CATTGAGCAGAGGAAGAAGTTTCAGAGAGAGGTTTTGCTGCTTTCCAAGTTT-AGACATG  388

Query  184  AAAACAATGTGCAGTTCATTGGGGCGTGCATAGAACCAAAGTTGATGATAATAACTGAAC  243
            |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  389  AAAACATTGTGCGGTTCATTGGGGCGTGCATAGAACCAAAGTTGATGATAATTACTGAAC  448

Query  244  TCATAGAAGGCAATACTCTTCAGAAGTTTATGCTGAGTACTCAGTCCA  291
            |||| ||||||||||||||||||||||||||| |||||  || |||||
Sbjct  449  TCATGGAAGGCAATACTCTTCAGAAGTTTATGTTGAGTGTTC-GTCCA  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5