BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924267
Length=968
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54970.1 | Symbols: ATPRP1, RHS7, PRP1 | proline-rich protei... 780 0.0
AT3G62680.1 | Symbols: PRP3, ATPRP3 | proline-rich protein 3 | ... 429 2e-119
> AT1G54970.1 | Symbols: ATPRP1, RHS7, PRP1 | proline-rich protein
1 | chr1:20505000-20506488 FORWARD LENGTH=1258
Length=1258
Score = 780 bits (422), Expect = 0.0
Identities = 766/919 (83%), Gaps = 76/919 (8%)
Strand=Plus/Plus
Query 108 CCTCC-GTCTTACACTTCACCGGTTAATAAACCCACGCTTCCACCTCCGGTTTACATTCC 166
||||| || ||||||| |||||||| | ||||| || ||||||||||| ||||||| |||
Sbjct 130 CCTCCGGT-TTACACTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACTCC 188
Query 167 ACCGGTTCAAAAACCTACCCTTC-CATCTCCGGTTTACACT---CC-AC-CT-GC-CCAC 218
||| || || || ||||| | || || |||||||||||||| || || || | || |
Sbjct 189 ACCTGTCCACAAGCCTACAC-TCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTC 247
Query 219 AGGCCTACACTCTCACCTCCGGTTTATACTAAACCAACTCTACCTCCTCC-GGCTTACAC 277
||| ||||||| || |||||||| | ||| ||||| || || |||| | | |||||
Sbjct 248 CGGCTTACACTC-CA---CCGGTTTACAATAAGCCAACGCTCCCAGCTCCTGTC-TACAC 302
Query 278 TCCACCGGTTTATACTAAGCC-A-ACTCTACCAGCTCC--TGT---CT-A--C-ACTC-C 325
||| || | || || |||||| | ||||| || |||| | | || | | |||| |
Sbjct 303 TCCGCCTG-TT-TA-TAAGCCTACACTCT-CC-CCTCCGGTTTACACTAAGCCAACTCTC 357
Query 326 --ACCT---GTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTCA 380
|||| |||| |||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 358 TTACCTCCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCA 417
Query 381 CCTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCCCCT 440
||| |||||||||||||||| ||||| ||||||||| ||| |||||||| |||||| |||
Sbjct 418 CCTACGGTTTACAAGCCAACACTCTCTCCTCCGGTTAACAATAAGCCAAGTCTCTCGCCT 477
Query 441 CCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCCATCCTCCG 500
|||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 478 CCGGTTTACAAGCCAACACTCTCTCCTCCGGTTTACACTAAGCCAACTCTCCCTCCTCCG 537
Query 501 GTCTACAAAAAGTCTCCAAGCTTTTCTCCTCCACCTCCATATGTACCAAAACCAACCTAC 560
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 538 GTCTACAAAAAGTCTCCAAGCTATTCTCCTCCACCTCCATTTGCACCAAAACCAACCTAC 597
Query 561 ACTCCACCCACCAAACCATACGTCCCTGAGATCATTAAAGCCGTTG-ATGGCATCATCTT 619
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct 598 ACTCCACCCACCAAACCATACGTCCCAGAGATCATTAAAGCCGTTGGA-GGCATCATCTT 656
Query 620 ATGCAAAAACGG--A-G---C--A----A---AAG---C-AAAG-A----TTGTGTGCTC 655
|||||||||||| | | | | | ||| | |||| | ||||||||||
Sbjct 657 ATGCAAAAACGGCTACGAAACCTACCCTATTCAAGGAGCGAAAGCAAAGATTGTGTGCTC 716
Query 656 CGAGATGATATCATACG-GAAAGAACAAGAACGAGGTTGTGATCTACAGCAACCCAACTG 714
|||| | ||||||| ||| || |||||||||||||| |||||||| | |||||||
Sbjct 717 GGAGAGGGGGTCATACGAGAA-GAGTAAGAACGAGGTTGTCATCTACAGTGATCCAACTG 775
Query 715 ACTCTAAGGGATATTTCCACGTGGCGTTAACCCATATCAAGAACCTATCTCACTGCCGTG 774
||| ||||||||| |||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 776 ACTTTAAGGGATACTTCCACGTGGTGTTAACCCACATCAAGAACCTATCTAACTGCCGTG 835
Query 775 TCAAACTCTACACATCTCCGGTCGAAACTTGCAAGAACCCGACCAATGTCAACAAGGGTC 834
|||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 836 TCAAGCTCTACACATCTCCCGTCGAGACTTGCAAGAACCCAACCAATGTCAACAAGGGTC 895
Query 835 TCACCGGAGTTCTCTTATCGATGTACTCGGCCGACAAGAACTTGAAACTCTTTAACGTCG 894
|||||||||||| ||| ||||||||||| | |||||||||||||| ||||| ||||| |
Sbjct 896 TCACCGGAGTTCCCTTCTCGATGTACTC--C-GACAAGAACTTGAAGCTCTTCAACGTTG 952
Query 895 GTCCTTTATACTTCACCG--G-TTCCAAGGCTGCTCCCGCCACTCCCAAATACTAATCAT 951
||||||| |||||||||| | |||||||||||||||||||||||||| ||||| |||||
Sbjct 953 GTCCTTTCTACTTCACCGCCGGTTCCAAGGCTGCTCCCGCCACTCCCAGATACTGATCAT 1012
Query 952 CATCACATT-ATT-ATGAT 968
|| || || ||| |||||
Sbjct 1013 CA-CATTTTGATTTATGAT 1030
Score = 647 bits (350), Expect = 0.0
Identities = 444/490 (91%), Gaps = 4/490 (1%)
Strand=Plus/Plus
Query 21 ATGGCGATTACACGCAACTCCTTTGCGATTTGCCTACTCCTCTCTTTGGCCACCATTGCC 80
||||| || ||||| |||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1 ATGGCTATCACACGTGCCTCCTTTGCGATTTGCATCCTCCTCTCTTTGGCTACCATTGCT 60
Query 81 ACTGCTGATTATTACGCTCCCTCATCTCCTCC-GTCTTACACTTCACCGGTTAATAAACC 139
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 ACTGCTGATTATTACGCTCCCTCATCTCCTCCGGT-TTACACTTCACCGGTTAATAAACC 119
Query 140 CACGCTTCCACCTCCGGTTTACATTCCACCGGTTCAAAAACCTACCCTTCCATCTCCGGT 199
||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||
Sbjct 120 CACGCTTCCACCTCCGGTTTACACTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGT 179
Query 200 TTACACTCCACCTGCCCACAGGCCTACACTCTCACCTCCGGTTTATACTAAACCAACTCT 259
|||||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct 180 TTACACTCCACCTGTCCACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCT 239
Query 260 ACCTCCTCCGGCTTACACTCCACCGGTTTATACTAAGCCAACTCTACCAGCTCCTGTCTA 319
||| |||||||||||||||||||||||||| | ||||||||| || ||||||||||||||
Sbjct 240 ACCACCTCCGGCTTACACTCCACCGGTTTACAATAAGCCAACGCTCCCAGCTCCTGTCTA 299
Query 320 CACTCCACCTGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTC 379
|||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 300 CACTCCGCCTGTTTATAAGCCTACACTCTCCCCTCCGGTTTACACTAAGCCAACTCTCTT 359
Query 380 ACCTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCCCC 439
||||||||||| |||||| || ||||| ||||| ||||||||||||||||||||||| ||
Sbjct 360 ACCTCCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCACC 419
Query 440 TCCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTC-CATCCTC 498
| ||||||||||||| |||||||| ||||||||| ||| |||||||| |||| | ||||
Sbjct 420 TACGGTTTACAAGCCAACACTCTCTCCTCCGGTTAACAATAAGCCAAGTCTCTCG-CCTC 478
Query 499 CGGTCTACAA 508
|||| |||||
Sbjct 479 CGGTTTACAA 488
Score = 228 bits (123), Expect = 9e-59
Identities = 295/371 (80%), Gaps = 39/371 (11%)
Strand=Plus/Plus
Query 150 CCTCCGGTTTACA-TTCCACCGGTTCAA-AAACCTACCCTTCCATCTCCGGTTTACACTC 207
||||||||||||| || |||||||| || ||||| || |||||| |||||||||||||||
Sbjct 88 CCTCCGGTTTACACTT-CACCGGTT-AATAAACCCACGCTTCCACCTCCGGTTTACACTC 145
Query 208 CACCTGCCCACAGGCCTACAC-TCTCACCTCCGGTTTATACTAAACCAACTCTACCTCCT 266
|||| | |||| ||||| | || ||||||| ||||| ||| || || || |||
Sbjct 146 CACCGGTTCACAAACCTACCCTTC-CACCTCCTGTTTACACT---CC-AC-CT--GTCCA 197
Query 267 CCGGCTTACACTC-CA---CCGGTTTATACTAAGCCAACTCTACCAGCTCCTGTC-TACA 321
| || ||||||| || |||||||| |||||||||||||||||| |||| | | ||||
Sbjct 198 CAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCACCTCC-GGCTTACA 256
Query 322 CTCCACCTGTTTAC---AAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCT 378
||||||| |||||| ||||| || || || |||||| | || | | | |||
Sbjct 257 CTCCACCGGTTTACAATAAGCCAACGCTCCCAGCTCCTG--T---CT-A--C-A--CTC- 304
Query 379 CACCTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCCC 438
| ||| ||||| ||||| || ||||| |||||||||||||||||||||||||||| |
Sbjct 305 CGCCT---GTTTATAAGCCTACACTCTCCCCTCCGGTTTACACTAAGCCAACTCTCTTAC 361
Query 439 CTCCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTC-CATCCT 497
||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| || |||
Sbjct 362 CTCCGGTTTTCAAGCCTACACTCTCTCCTCCAGTTTACACTAAGCCAACTCTCTCA-CCT 420
Query 498 CCGGTCTACAA 508
|||| |||||
Sbjct 421 ACGGTTTACAA 431
Score = 117 bits (63), Expect = 2e-25
Identities = 151/190 (79%), Gaps = 20/190 (11%)
Strand=Plus/Plus
Query 262 CTCCTCCGGCTTACACTCCACCGGTTTATACTAAGCCAACTCTACCAGCTCCTGTCTACA 321
||||||||| ||||||| |||||| ||| | ||| || || || ||| |||| || ||||
Sbjct 86 CTCCTCCGGTTTACACTTCACCGG-TTA-A-TAAACCCACGCTTCCACCTCCGGTTTACA 142
Query 322 CTCCACCTGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTCAC 381
||||||| ||| |||| ||||| ||| ||||||||||||||||| || | | ||
Sbjct 143 CTCCACCGGTTCACAAACCTACCCTTCCACCTCCTGTTTACACT---CC-A--C-CT--- 192
Query 382 CTCCGGTTTACAAGCCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCC-CCT 440
||| ||||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 193 GTCC-----ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTA-CCACCT 246
Query 441 CCGGTTTACA 450
|||| |||||
Sbjct 247 CCGGCTTACA 256
Score = 89.8 bits (48), Expect = 5e-17
Identities = 53/55 (96%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 448 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCT-CCATCCTCCGG 501
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 197 ACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTACCA-CCTCCGG 250
> AT3G62680.1 | Symbols: PRP3, ATPRP3 | proline-rich protein 3
| chr3:23182722-23183994 FORWARD LENGTH=1173
Length=1173
Score = 429 bits (232), Expect = 2e-119
Identities = 692/897 (77%), Gaps = 99/897 (11%)
Strand=Plus/Plus
Query 150 CCTCCGGTTTAC-ATTCCACCGGTTCAAAAACCTACCCTTCCATCTCCGGTTTACACTCC 208
|||||||||||| | | |||||| || ||||| || || || |||||||||||||||||
Sbjct 144 CCTCCGGTTTACAAAT-CACCGGAACACAAACCCACGCTCCCGTCTCCGGTTTACACTCC 202
Query 209 ACCTGCCCACAGGCCTACACTCTCACCTCCGGTTTATACTAAACCAACTCTACCTCCTCC 268
||| | ||| |||||| ||||| ||||| || || ||||| |||||| | || |||||
Sbjct 203 ACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGCCAACTATCCCACCTCC 262
Query 269 GGCTTACACTCCACCGGTTTATACTAAGCCA-ACTCTAC-CAGCTCCTGTCTACACTCCA 326
|| |||||| ||||||| || ||| ||| || || | | || |||| || |||||| |
Sbjct 263 GGTTTACACCCCACCGG-TT-TAC-AAG-CATACAC-CCTCACCTCCGGTTTACACT-AA 316
Query 327 -CC-TGTTTACAAGCCTACACT-TTCA--CCTCCTGTTTACACTAAGCCAACTCTCTCAC 381
|| | | | | || || | | || || || |||| || ||||||||||||||||
Sbjct 317 GCCAACTATCCCA-CCCCCAGTGTACACCCCACCCGTTT--AC-AAGCCAACTCTCTCAC 372
Query 382 CTCCGGTTTACA--AG-CCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCT-C- 436
|||||||||||| | || ||| || ||||||| |||||||| ||| | | | |
Sbjct 373 CTCCGGTTTACACTAAACCCACTATCCCACCTCCCGTTTACACC---CCACCGGTTTACA 429
Query 437 --CC--CTCCGGTTTACA--A-GCCTACACTCTCACCTCCGGTTTACACTA-AGC----- 483
|| |||||||||||| | ||| ||| || ||||||||||||||||| | |
Sbjct 430 AGCCAACTCCGGTTTACACTAAGCCAACAATCCCACCTCCGGTTTACACTCCACCGGTTT 489
Query 484 -CAA-C-T-CTCCATC-CTCC-GGTCTACAAAAAGTCTCCAAGCT-TT--TCTCCTCCAC 534
||| | | |||| || | || ||||||||||||||||||||||| || |||||||| |
Sbjct 490 ACAAGCCTACTCCCTCTCCCCCGGTCTACAAAAAGTCTCCAAGCTATTCGTCTCCTCCTC 549
Query 535 CTCCATATGTACCAAAACCAACCTACACTCCACCCACCAAACCATACGTCCCTGAGAT-C 593
||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
Sbjct 550 CTCCATACGTACCAAAACCAACCTACACTCCAACCACCAAGCCATACGTCCCAGAGATTC 609
Query 594 ATTAAAGCCGTTGATGGCATCAT-CTTATGCAAAAACGG--A-G---C--A----A---- 636
|||| ||||||||||||||||| || |||||||||||| | | | | |
Sbjct 610 -TTAAGGCCGTTGATGGCATCATTCT-ATGCAAAAACGGCTACGAAACCTACCCTATTCT 667
Query 637 A--AGCAAAGAT-----T-GTGTGCTCCGAG--ATGATATCATACGGAAAGAA-CAAGAA 685
| ||||||||| | ||||| ||||| | | ||||||||| || || ||| |
Sbjct 668 AGGAGCAAAGATACAGATTGTGTGTTCCGACCCA-GC-ATCATACGGTAA-AAGCAACAC 724
Query 686 CGAGGTTGTGATCTACAGCAACCCAACTGACTCTAAGGGATATTTCCACGTGGCGTTAAC 745
|||||||||||||||||| || |||||||||||||||||||| |||||| || |||| ||
Sbjct 725 CGAGGTTGTGATCTACAGTAATCCAACTGACTCTAAGGGATACTTCCACTTGTCGTTGAC 784
Query 746 CCA-TATCAAGAACCTATCTCACTGCCGTGTCAAACTCTACACATCTCCGGTCGAAACTT 804
| | ||| ||| | ||| || |||| |||||||| |||||| |||||||||||| ||||
Sbjct 785 C-AGTATTAAGGATCTAGCTTACTGTCGTGTCAAGCTCTACTTATCTCCGGTCGAGACTT 843
Query 805 GCAAGAACCCGACCAATGTCAACAAGGGTCTCACCGGAGTTCTCTTATCGATGTAC---T 861
||||||||||||||||||| |||||||||||||| ||||||| ||| || ||||| |
Sbjct 844 GCAAGAACCCGACCAATGTTAACAAGGGTCTCACAGGAGTTCCCTTGGCGTTGTACGGAT 903
Query 862 -CGG---C--C--G-ACAAGAACTTGAAACTCTTTAACGTCGGTCCTTTATACTTCACCG 912
| | | | | ||||||||||| | ||||||| |||||| ||||| |||| ||| |
Sbjct 904 ACCGTTTCTACCCGGACAAGAACTTGGAGCTCTTTAGCGTCGGACCTTTCTACTACACTG 963
Query 913 GTTCCAAGGCTGCTCCCGCCACTCCCAAATACTAATCATCATCA-CATTATTATGAT 968
|| |||||||||| ||||||||||||||||||| ||| | || | ||| ||||||||
Sbjct 964 GTCCCAAGGCTGCCCCCGCCACTCCCAAATACTGATCGTGATGATCAT-ATTATGAT 1019
Score = 126 bits (68), Expect = 3e-28
Identities = 189/242 (78%), Gaps = 29/242 (12%)
Strand=Plus/Plus
Query 291 ACTAAGCCAACTCTACCAGCTCCTGTCTACACTCCACCTGTTTACAAGCCTACACTTTCA 350
|||||||||||| | ||| |||| || ||||| ||||| |||||||||| ||||| |||
Sbjct 240 ACTAAGCCAACTATCCCACCTCCGGTTTACACCCCACCGGTTTACAAGCATACACCCTCA 299
Query 351 CCTCCTGTTTACACTAAGCCAAC--T--------C--TCT-CA--CCTCCGGTTTACAAG 395
||||| ||||||||||||||||| | | | | || || || |||||||||
Sbjct 300 CCTCCGGTTTACACTAAGCCAACTATCCCACCCCCAGTGTACACCCCACCCGTTTACAAG 359
Query 396 CCAACTCTCTCACCTCCGGTTTACACTAAGCCAACTCTCTCC-CCTCCGGTTTACAAGCC 454
||||||||||||||||||||||||||||| || ||| || || ||||| ||||||| ||
Sbjct 360 CCAACTCTCTCACCTCCGGTTTACACTAAACCCACTATC-CCACCTCCCGTTTACACCCC 418
Query 455 TACAC--TCT-CA--CC---TCCGGTTTACACTAAGCCAACTCTCC-ATCCTCCGGTCTA 505
|| | | | || || ||||||||||||||||||||| ||| | |||||||| ||
Sbjct 419 -AC-CGGTTTACAAGCCAACTCCGGTTTACACTAAGCCAACAATCCCA-CCTCCGGTTTA 475
Query 506 CA 507
||
Sbjct 476 CA 477
Score = 102 bits (55), Expect = 6e-21
Identities = 109/134 (81%), Gaps = 7/134 (5%)
Strand=Plus/Plus
Query 262 CTCCTCCGGCTTAC-ACTCCACCGGTTTATACTAAGCCAACTCTACCAG-CTCCTGTCTA 319
||||||||| |||| | | |||||| | || || || || || || | |||| || ||
Sbjct 142 CTCCTCCGGTTTACAAAT-CACCGG--AACAC-AAACCCACGCT-CCCGTCTCCGGTTTA 196
Query 320 CACTCCACCTGTTTACAAGCCTACACTTTCACCTCCTGTTTACACTAAGCCAACTCTCTC 379
||||||||| |||||||||||||| || || ||||| || ||||||||||||||| || |
Sbjct 197 CACTCCACCCGTTTACAAGCCTACCCTCTCCCCTCCAGTCTACACTAAGCCAACTATCCC 256
Query 380 ACCTCCGGTTTACA 393
||||||||||||||
Sbjct 257 ACCTCCGGTTTACA 270
Score = 84.2 bits (45), Expect = 2e-15
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 436 CCCCTCCGGTTTACAAGCCTACACTCTCACCTCCGGTTTACACTAAGCCAACTCTCC 492
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |||
Sbjct 271 CCCCACCGGTTTACAAGCATACACCCTCACCTCCGGTTTACACTAAGCCAACTATCC 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47370800621
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5